Alkalihalophilus pseudofirmus: BpOF4_03410
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Entry
BpOF4_03410 CDS
T01165
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpf
Alkalihalophilus pseudofirmus
Pathway
bpf03030
DNA replication
bpf03430
Mismatch repair
bpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BpOF4_03410 (dnaE)
03430 Mismatch repair
BpOF4_03410 (dnaE)
03440 Homologous recombination
BpOF4_03410 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpf03032
]
BpOF4_03410 (dnaE)
03400 DNA repair and recombination proteins [BR:
bpf03400
]
BpOF4_03410 (dnaE)
Enzymes [BR:
bpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BpOF4_03410 (dnaE)
DNA replication proteins [BR:
bpf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BpOF4_03410 (dnaE)
DNA repair and recombination proteins [BR:
bpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BpOF4_03410 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
ADC48748
UniProt:
D3FWZ3
LinkDB
All DBs
Position
complement(2955740..2959093)
Genome browser
AA seq
1117 aa
AA seq
DB search
MNLLHTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIK
PVIGLEIPIKDNEHSGSLRLLAKNTTGYKSLLKISTLLQTEDNLRAGLAPDDLRSRINDC
LIIIPYDSPMHQLIKAGEVEAAKEWCVRWITRSKKEDWYIDLAGNADRESHHWEAVSQFA
SRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIHLQDEGHAERSFYLKSKEELKQSF
SPVPAALSGLGEIVEQCNITIDLDRRYLPAYPFTKSEPAKEVLKKACLEGANKRFNHTIT
DEVRRRLEKELAVIDQMGFNDYFLIVADFMQHARKRNMMTGPGRGSAAGSLTAYVLYITD
VNPLKYDLLFERFLNPERISLPDIDIDFPDHRRDEVIQYVQEKYGPDHVAQIATFGTLAA
RAAIRDTGKALSCDSFLIEKVAKLIPSTPGITIKKAMEQERGLQQIRNDSEDANKLLSIA
ESIEGLMRHVSTHAAGVVISPVPLTELVALQKGQGPVRLTQATMGIVEDIGLVKFDFLGL
RNLTLLERVLSIIEQESGRRVDIHSIPWDDVKTYELLANGDTTGVFQLESQGMRRVLRSL
MPTEFEDIVAVNALYRPGPMDYIQVYINGKHKKAPINDIHEELTPILGKTYGVIVYQEQI
MQIAVKMAGFSLARADLLRRAISKKNKADLEKSRGDFLKGAKEKGYNEDIANKVFQLIER
FANYGFNRSHAVAYSMISYQLAYLKAHFPTAFYTALLSSVWNTPEKLTELLQETKKRKID
IMPPSISKSGLLFTLEDHGHTVRFGLLPVSHVGVQAAKHIIDTAREAPYKDLFDYCVRVN
QRIVNRRATENLIKAGAMDEWGEDRATLLYNLDQAYSFAEKVLSFQDEMAGLFTLDIETP
QYEHVDPLSLQEKLSFEQEALGVYVSGHPIEQVSDVLAKYQRVLIADMIQDQKGQERKRL
RIAGMVSSLKKITTKKGDPMAFLEAADESGHCEVVVFPDVWKEYETMIREGELLFMEGAF
DHTRDKPQFLLKRSVLIQSIVAASRKEKVLYLKLKDQSQLPDVKKLLIGDEGATKVITYL
EKERQTIQMQPVYEVGPSEECMNHLMELLGREQVVLK
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
gtgaacttgcttcatacaaatgtttatagtgaatacagtttgctttcctcgactaatcgg
attaaggagctggtgagtaaagcaaaagagacaggtttcactgcgcttgcattaacagac
aaagggaatatgtttgcggccgtccctttctataaagcctgcttggaaacggggatcaaa
cctgtaataggtttagagatacctattaaagacaatgagcacagcggttcattaagactg
ctagctaaaaatacaacaggatataagagcttattaaagatttcgacccttcttcaaaca
gaggacaacctacgtgctggattagcacctgatgacttgcgttcgcgtattaatgattgt
ctcattattattccttatgacagtccgatgcatcaattgatcaaggcaggagaggtagaa
gcagcaaaagaatggtgtgtgcgctggatcacccgttctaaaaaagaggattggtatatc
gaccttgctggaaatgctgatagagaaagtcaccattgggaagctgtttcccaatttgct
tctcgttataacttgaaactatgcgggtctaaccctgttcgatttacaagtaaggagaat
tatgaagcttatgcggcagttagagcgatacgtgaggggaaaacgattcaccttcaggac
gagggacacgctgaaaggtcattttatttaaagagtaaagaagagttaaagcaatcattt
tcgcctgttcctgctgctttaagcgggttaggagaaatcgttgaacaatgcaatattacg
atcgatttagaccggcgttatttacctgcctatccttttacaaagagtgagcctgcaaaa
gaagtgctgaaaaaagcatgcttagagggtgctaacaagaggttcaaccacaccatcact
gatgaagtaagaagaaggcttgaaaaagaattagcagtcattgaccaaatgggattcaat
gattactttttaatcgttgcagattttatgcagcatgcaagaaaacgaaacatgatgaca
ggaccggggcggggttctgctgcagggtctttgacagcttatgtgttatatataacagat
gtaaatccgctgaaatacgatctcttatttgaacgatttcttaatccagaacgaatttca
ctcccagatattgatattgatttcccagatcatagaagagatgaggttattcaatatgta
caggaaaaatacggcccggatcatgtggcgcaaattgctacgtttggtacgctggcagcc
agggctgcgataagagatacaggaaaggcactctcttgtgactcttttttaattgaaaag
gttgcgaaactcatcccttcaacacctggaattacaattaaaaaagcaatggaacaagag
agaggattacaacaaataagaaatgattcagaggatgcaaacaaacttctctcgattgca
gaatcaatcgaaggtctgatgagacatgtgtctactcacgcagcaggtgtcgtgataagt
cctgttccattaacagagcttgtcgctttacaaaaagggcaaggacccgttcggttgacg
caagcaacaatgggtattgtagaggatattgggttagtgaaatttgattttctcggatta
cgtaatttaactttgctagagcgagttctttctattatagaacaggaatcaggaagaagg
gtggatattcattccattccttgggatgatgtgaaaacctatgaacttttagcaaatggt
gatacaacaggagtatttcagctagagtctcaggggatgagaagagtcctgcgctcgctt
atgccgacagaatttgaagatatcgtggcagttaatgcgctctaccggccgggtccgatg
gattatattcaagtgtatattaacgggaaacataagaaagcccccattaatgatatacat
gaggaattaactccaatccttggaaaaacatatggcgtcattgtttatcaagaacaaatt
atgcaaattgccgttaaaatggctggcttttcattagcccgtgctgacttattgagacga
gcaattagtaaaaaaaacaaagctgatttagaaaaaagccgtggagattttctaaaaggt
gccaaagaaaaaggatataacgaagacatagcgaataaagtatttcaactcattgaacga
tttgcgaattatgggtttaatagaagtcatgctgttgcatacagtatgatcagttatcaa
ctcgcctatttgaaagcccattttccgactgccttttatacagctttactatcgagtgta
tggaataccccagaaaagctgacggaattacttcaagagactaaaaagaggaagattgac
atcatgcctccaagtatctcgaaaagtggtttgttgtttactcttgaagaccatggacac
actgttcgctttggccttctgccggttagtcatgtaggggtgcaggcggcaaagcatatc
attgatacagccagagaggcgccatataaagatttatttgattactgtgtgagagttaat
cagcgcatcgttaatcggcgcgctactgaaaatttaatcaaagctggggccatggatgaa
tggggggaagatcgtgcgaccctcttatataaccttgatcaagcgtattcttttgctgag
aaagtactatcttttcaagatgaaatggctggattgtttacgttagatattgaaacccct
cagtatgaacacgttgaccctttatctctgcaagaaaagctttcttttgaacaagaagct
cttggtgtctatgtatcggggcatccgatagagcaagtaagcgatgtgttagctaaatat
cagcgtgtgctaatcgcagatatgattcaagaccaaaaaggtcaggaacgtaaacgattg
agaattgcgggcatggtgtctagcttgaaaaaaattacgacaaaaaaaggagatccaatg
gcctttttggaggctgcagacgaatctggccattgtgaagtggttgttttcccggatgtg
tggaaagaatacgaaacgatgataagagaaggagagcttcttttcatggaaggggcattt
gatcatacacgtgacaagcctcaattcctcctaaaaaggagtgtacttattcaatcgatt
gtcgctgcatctcgtaaagagaaggtgctgtaccttaaattaaaagatcaatcgcagctg
ccggatgtaaagaaactgttgataggcgatgaaggggccacaaaagtcatcacctatttg
gagaaggagagacaaacaatacagatgcagcctgtttatgaggtggggccgagcgaagag
tgcatgaatcatttaatggaactgcttggcagggagcaagttgtgttgaaataa
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integrated database retrieval system
