Alkalihalophilus pseudofirmus: BpOF4_04025
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Entry
BpOF4_04025 CDS
T01165
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bpf
Alkalihalophilus pseudofirmus
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpf03016
]
BpOF4_04025
Enzymes [BR:
bpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
BpOF4_04025
Transfer RNA biogenesis [BR:
bpf03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
BpOF4_04025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Motif
Other DBs
NCBI-ProteinID:
ADC48871
UniProt:
D3FXN4
LinkDB
All DBs
Position
complement(3089435..3090001)
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AA seq
188 aa
AA seq
DB search
MNEQHYFLSVPVSAEIKELYSKHLADLKKQYPFKQWPHPEDLHITLVFLGAVSTKKRQEL
IEQINQTLNSSGLSSFTLRIGGLNTFGNERSPRILWADVQGNLEKLHKLQREINGVCQNL
DLRTDNRPYRPHMTIAKKWVGQMEFLLSDDPFTESFVEWDIPYFQLIEIHPKQSPKYKEI
QRFNLGGE
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacaacattattttctgtcagtgccagttagcgcggaaattaaagaactgtat
agtaagcacttagctgatttgaaaaaacaatatccatttaaacaatggcctcatccagag
gatctgcatattacgctcgtatttctaggggctgtatcaacgaagaaaaggcaagaattg
attgaacagataaatcagaccctcaactcaagcgggctctctagctttactttaagaata
ggcgggctaaacacattcggtaatgaacggtcaccgcgcattctttgggcagatgttcag
ggcaatctagaaaagcttcataaactccaaagagaaataaatggtgtatgtcaaaattta
gacctgcgtacagacaacagaccgtaccgtccacatatgactattgctaaaaaatgggtt
ggacaaatggaatttttattgtcagatgatccatttactgaatcctttgtagagtgggat
ataccgtattttcagctaattgaaatccacccgaagcaaagtccaaaatataaagaaatt
caacgttttaatttaggaggtgaatag
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