Alkalihalophilus pseudofirmus: BpOF4_05440
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Entry
BpOF4_05440 CDS
T01165
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B (DinA) SOS protein
KO
K03702
excinuclease ABC subunit B
Organism
bpf
Alkalihalophilus pseudofirmus
Pathway
bpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BpOF4_05440 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpf03400
]
BpOF4_05440 (uvrB)
DNA repair and recombination proteins [BR:
bpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BpOF4_05440 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BpOF4_05440 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA
AAA_30
AAA_22
AAA_7
TrwB_AAD_bind
AAA_19
DUF5908
P-loop_SecA
UB2H
HEM4
UvrD-helicase
PMT2_N
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADC49150
UniProt:
D3FYC7
LinkDB
All DBs
Position
complement(3341527..3343503)
Genome browser
AA seq
658 aa
AA seq
DB search
MDQTFELNSPYQPDGDQPAAIKEIVAGIKEGKKHQTLLGATGTGKTFTISNVIQEVNKPT
LIIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINEEID
KLRHSATSALFERKDVIIIASVSCIYGLGSPEEYRDLVVSLRTGMEMDRNALLRNLVDIQ
YDRNDVNFTRGTFRVRGDVVEIFPASRDEQCIRVEFFGDEIDRMTEVDALTGEIKGERNH
VAIFPASHFVTREAKLKKAIANIEVELEEQLKKMHEEGKLLEAQRLEQRTRYDLEMMAEM
GFCSGIENYSRHLTLREAGATPYTLLDFFPEDFLLIVDESHVTLPQVRGMYNGDRARKEV
LVNHGFRLPSALDNRPLKFDEFEKKISQSVYVSATPGPYELEHTPKMVEQIIRPTGLLDP
TIDVRPIEGQIDDMIGEINARVEKNERVLVTTLTKKMSEDLTDYLKEIGIKVRYLHSEIK
TLERIEIIRQLRMGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNSNGHVIMYADKMTKSMQIAIDETARRRSIQEEYNEKHGITPKTIQKKIPEVIQATI
VSDEDGEATAAPKTKLSKKDKEAMIERMEKEMKDAARELNFERAAELRDLLLELKAEG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagacatttgaacttaactcgccttatcaaccagatggcgatcagcctgctgcg
attaaagagattgtagcagggataaaagaaggaaaaaagcatcagactttgcttggtgca
acaggtacaggtaagacatttacgatatctaatgttatacaagaagtaaacaagcccaca
ttaattatcgcccataataaaactcttgcaggccagctttatagtgagtttaaagagttc
ttcccaaacaatgctgtagagtattttgtcagctactatgattattaccagccagaagct
tacgtccctagttctgatacgtatattgaaaaagatgcaagtataaatgaagaaatagat
aaacttagacactcggctacaagtgcgctttttgaaaggaaagatgtcatcattattgcc
agtgtctcttgtatttacggcttaggttcgcctgaggagtaccgcgacttagtcgtgtct
cttagaactggaatggaaatggaccgtaatgctttattgcgtaatttagtagacattcaa
tatgaccgaaatgatgtcaatttcacgcgtggtacgttccgagttcgcggcgatgtcgta
gaaattttcccggcatctcgtgatgaacaatgtattcgtgtggagttttttggtgatgaa
attgaccggatgacagaagtagatgcgctgacaggtgaaattaaaggcgagcgaaatcat
gtagccattttcccagcatcccacttcgttacccgtgaagcaaagcttaaaaaagcgatt
gctaatatcgaagtagaacttgaagaacagctgaagaaaatgcatgaggaagggaagctt
ctagaagcgcagcgtcttgaacagagaacgcgctatgatttagagatgatggctgaaatg
ggcttttgttcaggcatcgagaactattcacgacacttaacgttgcgcgaagcgggagct
accccttatacactgcttgacttcttccctgaagactttttactgattgtcgatgagtca
catgttacacttccgcaagttcggggaatgtataacggagacagagctagaaaagaagtg
ctcgtgaatcacggattccgtctgccttcagcgctggataaccggcctttaaaattcgat
gagtttgaaaagaagatttcacaaagcgtatacgtttcagcgacaccagggccgtatgag
cttgaacacacgccgaaaatggtcgagcagattatccgtccaacagggttactcgaccca
accattgacgtgcgcccgatcgaaggccagattgacgatatgatcggcgaaattaatgca
agagtcgagaaaaatgaacgagtgcttgtcacgacactgacgaagaaaatgtctgaggat
ttaacggattacttaaaagagatcggcattaaagtacgttatctccactcagagataaag
acgcttgaacgaatcgaaattattcgtcagctgcggatgggaacgtttgatgtgttagtc
ggcattaacttgctgcgtgaagggcttgatattcctgaggtgtctcttgttgcgatactc
gatgctgataaggaagggttcttgcgtgcagaacgttcgttaattcaaacgataggacgt
gctgctcgtaactctaatggtcatgtcattatgtatgcagataagatgacgaaatcgatg
cagatcgccattgatgaaacggcaagacgccgcagcattcaagaagaatataacgaaaaa
catggcatcacccctaagacgattcaaaagaaaattccagaggtgatccaggcaacgatt
gtatcggatgaagacggcgaggcaacagccgcaccgaagacgaagttaagcaagaaagac
aaagaagcaatgatcgaacgaatggaaaaagaaatgaaggatgctgcccgcgaattaaat
ttcgagcgtgcggcagagcttcgtgatttattattagagctaaaagcggaagggtga
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