Alkalihalophilus pseudofirmus: BpOF4_08515
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Entry
BpOF4_08515 CDS
T01165
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpf
Alkalihalophilus pseudofirmus
Pathway
bpf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BpOF4_08515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpf03021
]
BpOF4_08515 (rpoC)
03400 DNA repair and recombination proteins [BR:
bpf03400
]
BpOF4_08515 (rpoC)
Enzymes [BR:
bpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BpOF4_08515 (rpoC)
Transcription machinery [BR:
bpf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BpOF4_08515 (rpoC)
DNA repair and recombination proteins [BR:
bpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BpOF4_08515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADC49761
UniProt:
D3FR65
LinkDB
All DBs
Position
127820..131440
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFEYMKIGLASPNKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDPGETPLEKKQLLSEKEFRTYRDKYGRSFTAAMGAEAIRKLLA
DIDLEKEVDGLKEELLTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVSKGLAHNIKSAKRKVERVQPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREEAKGTGSIFKDTNEALIAYQNGYVHLHTRVAIP
VASLGKTTFTEDQEDKLLLTTVGKLIFNEILPPSFPYINEPTAVNLEVETPAKYIVPSTT
DVAKLFEEREVVAPFKKGFLGNIIAEVFKKFKITETSKMLDRMKDLGFKYSTKAGITVGV
ADIVVLAEKKEILAEAEIKVEKVLKQFRRGLITEEERYDRVISVWSEAKDVIQNKLMGTL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREKDCGTDRGLLVGAIKEGNEIIEGLY
DRLLGRVAFKTVRHPETNEVLVKKNELITEDVAKIILDAGIEEMTIRSVFTCNTRHGVCK
QCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEIEGEVVDFKEGDKREVTVRSEMESINYAIPYGARIKVAVGDHVKAGE
SLTEGSIDPKELLKVRGMDGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVVD
AGETNVLPGSLIEIQHFNDENAKVLLEGKRPATGRPVLLGITKASLETDSFLSAASFQET
TRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMDRYRHLNILSTHDDNQEEAEAAVLE
EVGTHE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataacttcgaatatatgaaaattggtcttgcttcaccgaacaagatt
cgttcttggtcacgtggggaagtaaagaaaccagaaacgattaactatcgtacacttaaa
cctgagaaagacggcttattctgtgagcgtattttcggacctcaaaaggactgggaatgt
cactgtggtaaatataagcgtgtccgttataaaggtgttgtctgtgatcgttgtggtgta
gaggttacacgtgcaaaagttcgtcgtgaacgtatgggtcatattgagcttgctgcacct
gtttctcacatttggtacttcaaaggaattccgagccgtatgggcctagtgctggatatg
tctcctcgttctcttgaagaagtcatttacttcgcttcatacgtagtaactgacccaggt
gagacgccgcttgagaaaaagcagcttctatctgagaaagaattccgcacataccgtgat
aaatacggccgctcatttactgctgctatgggagcagaagcgatccgtaagcttttagct
gatatcgatcttgaaaaggaagttgatgggctgaaagaagagctgttaactgctcaaggt
caacgtcgtacgcgtgcgattaaacgtctagaagtattagaagcattccgtaattcagga
aacgaaccttcttggatgattttagatgtacttccggttattccgccagaattacgtcca
atggttcagcttgatggtggtcgttttgctacttctgacttaaatgacctttatcgtcgt
gtaattaaccgtaacaatcgtttgaagcgccttctagatttaggagctccaaatattatt
gttcaaaatgaaaagcgtatgcttcaagaagcagtagatgcattgattgataatggccgc
cgcggacgtccggtaacaggaccaggtaaccgtccattaaaatctttatctcatatgctt
aaagggaaacaaggacgtttccgtcaaaacttactaggaaaacgtgttgattactctggt
cgttcggttatcgtagtaggtccgaacttaaagatgtatcagtgcggacttccaaaagag
atggcactagagctatttaagccatttgttatgaaggagcttgtaagtaaaggtcttgct
cataacattaagagtgctaagcgtaaggtagagcgcgttcaacctgaggtgtgggatgta
ctagaagaagtaattcgtgagcacccagttttattaaaccgtgcccctactcttcaccgt
cttggtatccaagcatttgagccaactttagttgaaggtcgtgcaattaagcttcacccg
ctcgtatgtacagcttataacgctgactttgatggtgaccaaatggctgtacacgtacca
ttatcagcagaagcacaagcagaagcgcgtcttctaatgcttgcagctcaaaacatcttg
aacccgaaagatggtaagccggttgttactccttctcaggatatggtattaggtaactac
tacctgacaatggagcgtgaggaagcaaaaggtacaggttctatctttaaagatacaaat
gaagcattgattgcgtatcaaaatggatatgtgcatcttcatacacgtgtagcaattcct
gttgcctcactcggtaaaacaacatttacagaagaccaagaagataaattgttattaacg
actgtagggaagttaattttcaatgaaattcttcctccgtcattcccatacatcaatgag
ccgactgcagtgaacttagaggtggaaacgccagctaaatacattgtaccaagcactaca
gatgtagcgaagttgtttgaagagcgtgaagttgtagcgccatttaagaaaggcttccta
ggaaatatcatcgctgaagtatttaagaagtttaagatcactgagacttctaagatgctt
gaccgcatgaaagacttaggatttaagtactcaacgaaagccggtattactgttggggta
gccgatatcgttgtacttgcagagaaaaaagaaatccttgctgaagctgaaattaaagtt
gagaaggtattaaagcaattccgccgtggtcttatcacagaggaagagcgctatgaccgt
gttatctcagtctggagtgaagcgaaggatgttatccagaataaattaatgggaactctt
gataaacgcaacccaatctttatgatgagtgactcaggtgcccgtggtaacgcatcaaac
tttacgcagcttgcaggtatgcgtggtctgatggctaacccgtctggtcgaatcattgag
cttccgatcaaatcaagtttccgtgaaggtttaacggtactcgagtacttcatctctact
cacggtgcacgtaaaggtcttgccgatacagccttaaagactgccgattcaggttacctg
actcgtcgtctagtagatgttgcgcaagatgtaatcgtacgtgaaaaagactgtggtaca
gatcgtggactattagtcggtgcgattaaagaaggaaacgaaattattgaaggactgtat
gaccgtttactcggccgtgtagcattcaagactgttcgccatcctgaaacaaatgaagtc
cttgttaaaaagaatgaacttattacagaggatgtcgctaaaataattctagatgctgga
attgaagaaatgacaattcgttctgtattcacttgtaatacacggcatggtgtgtgtaag
caatgttacggccgcaaccttgcgacaggaagcgacgtcgaagttggggaagcagttgga
attatcgctgctcaatcaatcggtgagccgggaacccagcttacaatgcgtacgttccat
acaggcggggtagcaggagacgatatcactcaaggtcttccgcgtatccaagagattttt
gaagctcgtaatcctaaaggtcaagcagttatctctgaaattgaaggagaagttgttgac
tttaaagaaggcgacaaacgtgaagttaccgttcgcagcgaaatggagagcattaactat
gcgatcccttacggtgcaagaataaaagtggctgtcggtgatcatgtaaaagccggcgaa
agcttaacagaaggttcgatcgatccgaaagaacttctaaaagttcgtggtatggacggt
gttcaagagtatctcttacgcgaagttcaaaaagtataccgtatgcaaggggtagaaatt
ggcgataagcacgttgaggttatggttcgtcaaatgcttcgtaaaattcgtgtggtggat
gcaggggaaacaaatgtacttccaggttcccttattgaaatccaacacttcaacgatgag
aacgcaaaagtgttacttgaaggcaaacgccctgctacaggtcgtccggtacttcttggt
atcacaaaagcttctcttgaaacggattccttcttatcagctgcttcgttccaagaaacg
actcgtgtcttaactgatgcggcaattaaaggaaaacgtgatgagttgctaggtcttaaa
gaaaatgttattatcggtaagttggttccagcgggaactggtatggaccgctaccgccac
ttgaatattttatctactcatgatgataatcaagaagaagcggaagctgctgtactagaa
gaagtaggaactcacgaataa
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