Alkalihalophilus pseudofirmus: BpOF4_11435
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Entry
BpOF4_11435 CDS
T01165
Symbol
yhaM
Name
(GenBank) 3'-5' exoribonuclease YhaM
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
bpf
Alkalihalophilus pseudofirmus
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpf03019
]
BpOF4_11435 (yhaM)
Messenger RNA biogenesis [BR:
bpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BpOF4_11435 (yhaM)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADC50340
UniProt:
D3FVD9
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All DBs
Position
731089..732048
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AA seq
319 aa
AA seq
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MSKGIRYHKVGEKIETYLLIKTATKGIASNGKPFLTLILGDNTGEIEAKLWGCSPEDEVA
FASKAIVHIQGDVIEYRGRLQLKIGSIRPTTAMDNVKVADFVRSAPISPEDMLEEVTQYI
FEMKNPTIQRITRFLLKKHQQEFLESPAATKNHHEFVSGLAYHVVSMLKIAKDLAVLYPT
LDKDLLYAGVILHDLGKVRELSGPIDTHYTIEGKLLGHISIMVNEIADAAKELELEGEEV
LILQHMVLSHHGKGEWGSPKVPVVREAEVLHMIDNVDAKINMMDRALERVQPGEFSERVM
ALDNRSFYKPAFHEPPLDI
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaagggatccgctatcataaagtaggcgagaagattgaaacctatctattaatt
aagacagcaacaaaagggattgcgagtaacggtaaaccgttcctaacgttaatcttagga
gataacacaggggaaatagaagcaaagctgtggggttgttcgcctgaagatgaagtggca
tttgctagtaaagccattgtccatatacaaggggatgttattgagtaccgtggacgcctt
cagttaaaaattggaagcatcagacctacaactgctatggataatgtaaaggtggctgat
tttgtccggtctgcgcctatatctccagaggatatgcttgaagaagttactcaatatatc
tttgaaatgaaaaatcctaccattcagcgcattactcgattcttattgaagaaacaccag
caagaatttctagaatcaccggcagcaacgaaaaaccatcatgaatttgtgtctggatta
gcctatcatgttgtatccatgttaaagattgcaaaagacttggctgtcctatatccaact
cttgataaagaccttttatatgctggtgtgatcttgcacgatttgggtaaggtacgtgag
ttgtcagggccgatagatacgcattacacgattgaaggaaagcttcttggacatatctca
atcatggtaaatgagattgcagatgcagctaaagaattagagcttgagggagaagaggtt
ttgattcttcaacatatggtgctcagccatcatggaaaaggagagtggggctcacctaaa
gttccagtcgtgcgtgaagcggaagttcttcatatgatcgataatgttgatgcgaaaatt
aacatgatggatcgcgccttagagcgggttcagcctggtgaattttctgagcgagtgatg
gctttagataatcgcagtttctacaagcctgcttttcatgaacctccattagatatctag
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