Alkalihalophilus pseudofirmus: BpOF4_19700
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Entry
BpOF4_19700 CDS
T01165
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bpf
Alkalihalophilus pseudofirmus
Pathway
bpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BpOF4_19700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpf03019
]
BpOF4_19700
03016 Transfer RNA biogenesis [BR:
bpf03016
]
BpOF4_19700
Enzymes [BR:
bpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BpOF4_19700
Messenger RNA biogenesis [BR:
bpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BpOF4_19700
Transfer RNA biogenesis [BR:
bpf03016
]
Prokaryotic type
tRNA degradation factors
BpOF4_19700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
SpoVT_C
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ADC51979
UniProt:
D3FTZ8
LinkDB
All DBs
Position
complement(2271594..2273708)
Genome browser
AA seq
704 aa
AA seq
DB search
MEQERQIFSIDWAGRELTVETGQFAKQANGAVLVRYGDTAVLSTVTASKEPKNLNFFPLT
VNYEERLYAAGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSV
DQNCSSEMAAMIGSSLALSISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESDIDLVVA
GTKDAINMVEAGADEVPEETMLEAIMYGHDEIKRLVAFQEEVVQAAGKEKKEIQLKQVDA
ELESAVRNLAEADLKKAVQVQEKHERQAAIDAVMKPIIEKYEEEQEELVGDVREVLQKVV
KEEVRRLITVEKVRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICTLGALGD
VQILDGLGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPIIPSENDF
PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHLTVLTDI
QGMEDALGDMDFKVAGTKEGVTALQMDIKISGINREVLEQALEQAKRGRMVILDNMLSAI
SESRSELSEYAPKIMTMHVNPDKIRDVIGPSGKMINKIIEETGVKIDIEQDGTVYISSVD
SKMNEQARKIIEDIVREVEVGQTYLGKVKRVEKFGAFVELFKGKDGLVHISQLAEERINK
VEDVVSIGDEILVRVTEIDNQGRVNLSRKVILKEEKEKQEQAGK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagaaagacaaattttttcaattgactgggcaggccgtgaactaacggtagaa
acaggtcaatttgctaaacaagcaaatggagcagtacttgttcgttatggtgatacagct
gtattatcaacagtaaccgcttcaaaagagccaaaaaacttaaacttctttccgcttact
gtaaactacgaagagcgtttatatgcagcaggaaaaatcccaggaggctttattaagcgt
gaaggccgtcctagtgaaaaagcgatcttagcgagccgcctaattgatcgaccaatccgc
cctcttttccctgatggcttccgtaacgaagttcaggtaatcagtattgttatgagtgtg
gatcaaaactgttcctctgaaatggctgcgatgatcggttcatctttagcattatcgatc
tcagacattccatttgatggaccaattgctggtgttacggttggacgtaaagatggcgaa
ctgatcattaacccaacaactgaacagctagaagaaagtgatattgatctagtagtagcg
ggtacaaaagatgcaattaacatggttgaagcaggggccgatgaggtgcctgaagaaacg
atgcttgaagcgattatgtacggtcacgatgaaattaaacgcttagtggctttccaggaa
gaagtagtacaagctgcaggaaaagagaaaaaagaaatccagcttaaacaagttgatgct
gagcttgagtctgctgttcgcaatttagctgaagcagatcttaaaaaagcggttcaagtc
caagaaaagcatgaacgtcaagcagcgattgatgctgtgatgaagcctattattgagaag
tatgaagaagagcaagaagagcttgtaggcgatgtgcgagaagttcttcaaaaagtagta
aaagaagaagtacgccgtttaattacggttgaaaaagtgcgtcctgatggccgtgcgatt
gatgagattcgtcccctagcttcacaagttgatctattgcctcgtacacatggatcaggt
ctttttacaagaggacaaactcaagcgttaagtatttgtacactaggagcacttggcgat
gtgcagattcttgatggacttggtattgaagagtctaaacgctttatgcaccattacaac
ttcccgcaatttagtgtaggggaaacaggaccgatccgtggaccgggccgtcgtgaaatt
ggtcatggtgctttaggtgaacgtgcccttgaaccgatcattccaagtgaaaatgacttc
ccatacacaatccgtcttgtgtcagaagttcttgaatcaaatggttcaacttctcaagca
agtatttgtgcaagtactttagcaatgatggatgctggtgtacctattaaagcaccggta
gcaggtattgcgatgggtcttgtaaaacaagatgagcatctaacggtattaacagatatt
caaggtatggaagatgcgcttggagatatggactttaaagtagcaggtactaaagagggt
gtaactgctctgcaaatggacattaagatctctggtattaaccgtgaagttcttgagcag
gctcttgaacaggctaagcgcggccgtatggttattttagataatatgttatctgcaatc
agcgaatctcgtagtgaattatctgagtatgctcctaaaattatgactatgcatgtgaat
ccagataagattcgcgatgttattggaccaagcggtaagatgatcaacaagattattgaa
gaaactggtgtcaaaattgatatcgaacaagatggtacagtttacatctcttcagtagac
agtaaaatgaacgaacaagctcgtaaaattatcgaagacattgttcgtgaagttgaagtt
ggtcaaacgtaccttggtaaagtaaaacgtgttgagaagtttggagcgtttgtcgagcta
tttaaagggaaagatggccttgttcatatttctcaactagctgaggaacgtattaataaa
gtagaagatgtcgtaagtattggcgatgagattttagttcgtgtaactgaaattgataac
caaggacgagtgaacctgtctcgtaaagtcatcttaaaagaagagaaagaaaaacaagaa
caagcaggaaaataa
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