Bathycoccus prasinos: Bathy03g05730
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Entry
Bathy03g05730 CDS
T03089
Name
(RefSeq) exosome complex exonuclease RRP4
KO
K03679
exosome complex component RRP4
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy03g05730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy03g05730
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Bathy03g05730
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Bathy03g05730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
19017110
NCBI-ProteinID:
XP_007514243
UniProt:
K8ET99
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All DBs
Position
3:1083888..1084847
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AA seq
319 aa
AA seq
DB search
MIVSEVEQQMRERKMSALQSLTTSSAPSSRVMLYTTPGEVVDGVNASEGFLKGHGTQVSE
GELRATVSGVVERVNKLVSVKPMKAKYTPETGDVVVGRINMISSKRWKVDINSRQEAVLQ
LSSVNLPSGQQRRRNEADELNMSRLFDTADVISAEVQSLFQDGAANLHARSTKYGRLSRG
VLVEVCPSLVKRLPQHFHALEVAPGVFIEVLIGCNGFIWVGSPGAATSKQATNEKSKTHE
EELVVVDKKERENIVRVANCVRVLDEIFFYVTPQSIMSIYKQSEGIDAKSILTSDGFLAR
VIEREIDARTRTEEDADML
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgattgtttctgaggttgagcaacagatgcgggagaggaagatgtccgcgctgcaatct
ttaacgacgtcttctgcaccttcatctcgcgtgatgttatacacgacgcctggggaagtt
gttgacggcgtcaatgcatcggaaggtttcctaaaaggccacgggacgcaagtctccgag
ggagagttgagagcgacggtgtctggtgtcgtagaaagagtgaataagttagtctccgtg
aaaccgatgaaagcaaagtacacgccagaaactggagacgtcgtggtcggtcggataaac
atgatttcctcgaaaaggtggaaagttgatataaactcgagacaagaggcggttttacaa
ctctcgagcgtaaacttaccaagcggtcaacaaagacgacgtaacgaagctgacgagttg
aacatgtcgcgattattcgacaccgctgatgtcatatcggcagaagtacagtcgttattt
caagacggcgcggcaaacttacatgcgcgttccacgaaatacggaaggctttcgagaggc
gtactcgtggaagtatgcccgagtttagtgaagcggctgccacagcactttcacgcttta
gaagttgcaccgggtgtttttatagaggttctcataggatgtaacggattcatatgggtc
gggtcgcccggcgccgcaacatcgaagcaagcgacaaacgaaaaaagcaagacgcacgaa
gaggaactcgttgtggtagataaaaaggaacgagaaaacatcgtgagagtggcgaattgc
gtccgagtgttggatgaaatcttcttttacgtcacgcctcaatcgatcatgagcatttat
aaacaatctgaaggcatagatgcgaaaagtattttaacgtcggatggatttctggcgcga
gtcattgagagagagattgacgctcgaacgcgtacagaagaagacgccgacatgctttga
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