Bathycoccus prasinos: Bathy04g04250
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Entry
Bathy04g04250 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03013
Nucleocytoplasmic transport
bpg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Bathy04g04250
03015 mRNA surveillance pathway
Bathy04g04250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy04g04250
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bathy04g04250
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Bathy04g04250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19016451
NCBI-ProteinID:
XP_007513872
UniProt:
K8EE98
LinkDB
All DBs
Position
4:join(842409..842624,842856..844130)
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AA seq
496 aa
AA seq
DB search
MSENKQEKEVAPPPPPGFEDVKAGAHLDEVAQVAEKLAKGEDLRLGTKKEGTVDAPDLSL
KTGQLKSWADEEAETEAIIKVADPNSKYTSAQTFDELGLSAELLQGLYTEMKFEKPSKIQ
AETLPMILTPPHRNLIAQAHNGSGKTTCFTLGILSRVNVNEPGTQGLMICPTRELVIQNV
GVMQRMGKYTNISIASTADPKYDGYNKEQINGQVVIGTPGRLLRWMREKQLDCSKVNCLV
FDEADNMLGTDGHRVDSTKILKHLQMSAKNWQVLLFSATFNEAVKTFATKVVPNANQIFL
PAHELSLDVIKQYRVNVQSNDQKDMLLKEKIFPLCDKIGQTIIFVRTREGARRLHASMQR
DGFKCTAIEGQMQNEDRDRVIKEFRDGQTKILIATDVLSRGLDVSTVTLVINYDMPVEYQ
NPSVPNFETYLHRIGRSGRFGKKGAAFNLLLGENERLVLDQIERHFEHMVPEVTLNDDDT
FESILTAAGLMSPDES
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaacaaacaagaaaaagaagtcgccccaccgccgccacccggtttcgaggac
gtcaaagccggcgcgcacctcgacgaagtcgcccaagtggcggagaaattagccaaaggc
gaggatttgcgtctggggacgaagaaagaaggcaccgtggacgcgccggatttgagttta
aaaaccggacaattgaaaagctgggccgacgaggaggctgaaaccgaggcgattattaaa
gtcgcggacccgaactcgaagtacacctcggcgcaaaccttcgacgagctcgggttgtcc
gcggaactcttgcaaggtctctacacggagatgaagttcgagaagccgtcgaagatccaa
gcggagacgttacctatgattttaacgccgccgcatagaaacttaatcgcgcaagcgcac
aacgggagtgggaaaacgacgtgttttacgctcgggattttgagtcgggtgaacgtgaac
gaacccgggacgcaagggttgatgatttgtccgacgagagaattggtgattcaaaacgtc
ggcgtgatgcaaaggatggggaagtacacgaacatttcgatcgcgagtaccgcggatccg
aaatacgacgggtataacaaagaacagattaacgggcaggtggtgattggaacgccgggg
aggttgttgcggtggatgcgggagaaacagttggactgttcgaaagtaaactgcttggtc
tttgacgaggcggacaacatgttaggcacggacggacacagagtggactcgacgaaaatt
ttgaaacatttacagatgagcgcaaaaaattggcaagtgttgttgttttcggcgacattt
aacgaggctgtgaagacgtttgccacgaaagtggtgcccaacgcgaaccagattttcttg
ccggcgcacgagttgtccttggacgtgatcaaacagtaccgagtgaacgtacaatcgaac
gaccagaaagacatgttattgaaagagaagatttttccgctttgcgataagattgggcaa
acgattattttcgtgagaacgagagaaggagcgagacgattacacgcgagcatgcaaaga
gacggatttaaatgcaccgcgattgaaggacaaatgcaaaacgaagaccgcgatcgagtg
attaaagagtttcgagacggtcaaacgaagattttgatcgccacggacgtgttaagtaga
gggttggacgtgtccacggtgacgttagttattaattacgacatgccggtggagtatcag
aacccgtccgtgccgaatttcgaaacgtacttacacagaatcggtcgttccgggaggttc
ggtaagaaaggcgcggcgtttaacttgttgttgggagaaaacgaaagattggttttagac
caaattgaaaggcatttcgagcacatggtgcccgaggtcacgttaaacgacgacgatacg
tttgaatcgattttaacagccgctggtttgatgtcgccggacgagtcttga
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