Bathycoccus prasinos: Bathy05g01530
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Entry
Bathy05g01530 CDS
T03089
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
bpg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Bathy05g01530
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy05g01530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy05g01530
03041 Spliceosome [BR:
bpg03041
]
Bathy05g01530
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Bathy05g01530
mRNA degradation factors
5'-3' decay
Lsm complex
Bathy05g01530
Spliceosome [BR:
bpg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Bathy05g01530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
19015656
NCBI-ProteinID:
XP_007512952
UniProt:
K8EVM4
LinkDB
All DBs
Position
5:270699..271067
Genome browser
AA seq
122 aa
AA seq
DB search
MLPLSLLKTSQGHSMLVELKNGETYNGVLNACDAWMNVHLTKVVCTNKDGDRFHELETCF
IRGNTIKYMCVQEEIIQLAKEENERRAAQRGPYQGRGGGRGDGGRGRGRGRGGRGGRGGG
DQ
NT seq
369 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgctctccttgctgaaaacctctcaagggcactccatgctcgttgagttgaaa
aacggtgaaacctacaacggagttttaaacgcctgcgacgcctggatgaacgtccactta
acgaaagtggtgtgcacgaacaaagacggcgaccggtttcacgagctggagacgtgcttt
attcgagggaatacgattaaatacatgtgcgtgcaagaagagatcattcagttagcgaaa
gaggagaacgaaaggagagcggcgcaaagaggaccgtatcaaggccggggcggcggcaga
ggcgacggcggcagagggagaggtcgaggcagaggaggcagaggaggcagaggaggcggc
gaccaataa
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