Bathycoccus prasinos: Bathy05g03250
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Entry
Bathy05g03250 CDS
T03089
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy05g03250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy05g03250
03041 Spliceosome [BR:
bpg03041
]
Bathy05g03250
03009 Ribosome biogenesis [BR:
bpg03009
]
Bathy05g03250
03016 Transfer RNA biogenesis [BR:
bpg03016
]
Bathy05g03250
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bathy05g03250
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Bathy05g03250
Spliceosome [BR:
bpg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Bathy05g03250
Complex C
U4/U6.U5 tri-SnRNP related factors
Bathy05g03250
Ribosome biogenesis [BR:
bpg03009
]
Eukaryotic type
Pre-60S particles
Helicases
Bathy05g03250
Transfer RNA biogenesis [BR:
bpg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Bathy05g03250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
19015828
NCBI-ProteinID:
XP_007513005
UniProt:
K8F4V4
LinkDB
All DBs
Position
5:578974..582348
Genome browser
AA seq
1124 aa
AA seq
DB search
MSPASARKREEEPGGHDEEEDETTTKSKKRTLVVVNEDSGGLDPELATKLPRRHQIKTDE
DFLLKSGCARIHPANQFQHGCLHDMVCPENYQPSKKKMPKVPAKKYPFELDTFQEQSVLC
LERQESVLVSAHTSAGKTVVAEYAIAMAKRDGQRVVYTSPLKALSNQKYRELKEEFSDVG
LMTGDTVINPNASCLVMTTEVLRSMLYKGGEVTREVGWVIYDEIHYMRDKERGVVWEESI
VLLPDTVKYVFLSATIPNAREFSEWVCKVHDIPCHIVYTDFRPTPLEHYIYPSGGDGIFL
IVDKTSAFKEDNFLKAISIANEKGAEVAQARTAARKASEMNGGDGTQAKLAQNTDVFKII
KMIVDRNYDPVIVFAFNKGECESFANALHKVDLCDENEKEMIDAIYWNAMDALSESDKKL
PQVASMPNLLRRGLGVHHSGLLPILKEVIEILFQEGLIKVLFATETMSVGLNMPARTCVF
ASPRKFDGTGFRWITSGEYTQMSGRAGRRGKDDRGLVVLMVDEKMDAPTAKDMLRGRSDP
LDSAFHVSYATLLNLMRVEGAEPEDMIMNSFAQFQNMRRVPQLEAKVALLEKKRDEIKIE
HEEQVNEYVKLRDGLDALTSERRAITNLPTHSVPFLQPGRLVRVCVDAPGSSLFSSSDTE
ALTRMTVDADDQYDDEVRNPLSFDETLLRKSVEDGNDSVWGVIVHFEKVGSKKHSKHQKY
LVDVLVKCAEKLKLSDADRETLKLNDPVFSLLNSSERHSLLQCEENRVVDELPAVEFRVV
RVPLEQLDCMSSIRVYLPKDLYPIEARTRCGASIREVLKRFEERSKEERERKEQKEEEEE
DEIVIPMLDAEKDMKVTDKAYAKTVQKIQMLSKMMQDHGFKTSENAIERLRKHVEKRRLE
YLVKHAKKEVTVASGMIKADVLKRMRRVLRRLGYVSEDGVVTQKGRCACELAGADELVAT
ELIFNGTFKALPLHMLVATVSCLVWKEKTGGKGGKDVNGKKQGMNVSEDVFSAHSNVKDA
ARKVFKQQLECKLKVDVEDSIERLRWDLMEVMLAWCKGNTFSEIMKMTEAFEGSIVRAIR
RIEELMRQLASACKVIGESDLEKKFLDACELVKRDIVFTPSLFV
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccagcttcggcgaggaaaagagaggaagaacctggtggtcacgacgaggaggag
gatgagacgacgacgaagagtaagaagcgaactttagtggtggtaaacgaggactcgggc
ggtctcgaccccgagctcgcgacaaaacttccccgtcgacaccaaatcaaaacggacgaa
gatttccttctcaagtccggctgcgcgcgcatacaccccgcgaatcagttccagcacggg
tgtttgcacgatatggtctgcccggagaactaccaaccgtcgaagaagaaaatgccgaaa
gtaccggcgaagaaatatccgttcgaattggacacgtttcaggagcaatccgtgctctgc
ttggaaaggcaagagtcggtgttggtgtcggcgcacacatcggccgggaaaacggtcgtc
gcggaatacgccatcgcgatggcaaaaagagacgggcagagagtggtgtacacgagtcct
ctgaaagcgttatcgaatcagaagtatcgagagttgaaggaggagttttcggacgtcggg
ttgatgacgggagatacggttataaatcccaacgcgagttgtttggtgatgacgacggag
gtgttaaggagcatgttgtataaaggcggggaggtcaccagagaggttgggtgggtgatt
tacgacgaaattcattacatgagagataaggagagaggggttgtgtgggaagaaagcatc
gtgttgttgccggatacggtgaagtacgtgtttttatcggcgacgattccaaacgcgaga
gagtttagcgagtgggtgtgtaaagtgcacgatattccgtgtcacatcgtgtatactgat
tttcggccgacgccgttggaacactacatttacccgagcggcggagatgggatatttttg
atcgtggataaaacaagcgcgtttaaggaggataattttttgaaagcgatttcaatcgcc
aacgagaaaggcgcggaggtggcgcaagcgaggacggcggcgaggaaagcgagcgagatg
aacggtggagatggaacgcaggcaaagttagcgcaaaacacggacgtttttaagattatt
aagatgattgtagataggaattacgatccagtgattgtgtttgcttttaataaaggcgag
tgcgaatcgtttgcaaacgcgttgcacaaggtggacttgtgcgacgagaacgagaaagag
atgatcgatgcgatttattggaacgcgatggatgcgttgagtgagagcgataagaagtta
ccgcaggttgcgtcgatgccaaacttgttgaggagagggttaggcgttcaccacagcggg
ttgttgccaattttgaaagaagtgattgaaattttgtttcaggagggtctgattaaagtt
ttgttcgccacggagaccatgtcggttggtttaaacatgccggcgagaacttgcgtattc
gcgtcgccgagaaagtttgatggcaccgggtttcgttggattacgagtggagagtacacg
caaatgagtggcagagccgggagaagaggaaaagacgatcgcggtttggtcgtgctcatg
gtagatgaaaaaatggacgcgccgacggcgaaagatatgttgagaggccgatcagatccg
ttggattcggcgtttcacgtgagttacgcgacgttgttgaatttgatgcgcgtggaaggc
gcggaaccggaagatatgattatgaattcgtttgcgcagtttcaaaacatgcgacgagtg
ccgcagttggaagcgaaagttgcgcttttggagaagaaaagagacgagattaagattgaa
cacgaagagcaggtgaatgaatatgtgaagctgagagatggtttagatgcgttgacgagt
gaacgacgcgcgatcacgaatttaccgacccatagcgtaccgtttttacaacccggtcga
ttggtgcgcgtttgcgtggacgcgcctggttcgtctctattttcgagctccgatacagag
gctttgacgcggatgactgtagatgcagacgaccaatacgacgacgaagttcgtaatccg
ctatcgttcgacgaaacgctgctaagaaaatcggtcgaagacggtaacgatagcgtctgg
ggcgtcatcgtccattttgaaaaagtcgggagcaagaaacattcaaagcatcaaaagtat
ttggtggacgttctcgtgaaatgcgcggaaaagttgaaactttcggatgccgatcgcgaa
actttaaaacttaatgacccggtgttttcgctgttgaacagctcagagcgacacagtttg
ttgcaatgcgaagaaaatagagtggtggacgaacttcccgcggttgagtttcgcgtagtt
cgcgttcctttagagcaactcgattgcatgtcttcgatacgcgtatacttaccgaaagat
ttatacccgatcgaagcacgaacacgttgtggagcgtctattagagaagttttgaaacgg
ttcgaggaaagaagtaaagaggaacgagaacgaaaagaacaaaaagaagaagaggaagaa
gatgaaattgtcattccgatgctcgacgccgagaaagatatgaaagttaccgataaagcc
tacgcaaaaactgtccaaaagattcaaatgctttcaaaaatgatgcaagatcatggtttc
aaaacgtccgaaaatgccatcgaaagacttagaaagcacgtcgagaaaaggcgcttggag
tacttggtcaaacacgccaaaaaagaagtcacggtggcgtctgggatgatcaaagcggac
gtcctcaaacgcatgcgacgcgtgttgagacgactcgggtacgtttccgaagacggcgtc
gtcactcaaaaaggtaggtgcgcgtgtgagcttgccggagcggacgaactcgtcgccacg
gagttgattttcaacggtacgtttaaagcgttgccgttacacatgcttgtcgctacggtt
tcgtgtctcgtttggaaagaaaaaacgggaggaaaaggaggtaaagatgtcaacggtaag
aagcaaggcatgaacgtgagcgaagatgtgttcagcgcgcactctaacgtgaaagacgcg
gctcgaaaagtgttcaagcagcagttggagtgcaagttaaaagtcgacgtcgaagactcg
atcgagcgtttgcgttgggacttgatggaagtcatgcttgcgtggtgtaaaggcaacacg
tttagcgagatcatgaaaatgaccgaagcattcgaaggatcaattgtgcgcgcgatcagg
aggattgaagagttgatgcgacagctcgcgtcggcgtgtaaagtcatcggagagtcggat
ttggagaagaagtttctggacgcctgcgagctcgtgaaaagagacatcgtcttcacgccg
tcgctcttcgtgtaa
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