Bathycoccus prasinos: Bathy06g04330
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Entry
Bathy06g04330 CDS
T03089
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Bathy06g04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpg03041
]
Bathy06g04330
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bathy06g04330
Spliceosome [BR:
bpg03041
]
Complex C
Other components
Step II factors
Bathy06g04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
AAA_30
nSTAND3
Flavi_DEAD
ABC_tran
Cas3-like_C_2
PhoH
TsaE
AAA_16
T2SSE
NB-ARC
Motif
Other DBs
NCBI-GeneID:
19015414
NCBI-ProteinID:
XP_007512814
UniProt:
K8EHF5
LinkDB
All DBs
Position
6:complement(828924..832502)
Genome browser
AA seq
1192 aa
AA seq
DB search
MAPSLEPKNNVTSAMQKLQHLSLINKVTKELDKNLGVNDKTLAEFIVDIAKASKFDPKTF
FNELQKNGAELPEPFANELVGTIERLANKGGGGARGGEKKKVIVEKPTKENPFPGLHRPD
AEEHAKMLSRELYGDRNPIENACDDPRLDKMNPGRLDENKNASSSGRGYDDSAFGQKKRK
STSEPAKRTIQGKPEVGKVYRGSVTNVMDFGAFVELVEFVNKTEGLAHVSKLPRVSNGNS
ARDVVQRGNPVYVKVLSLTNNRIALSMSDVNQETGEEETSYANNLPPPPPRSNPAPPRGG
AAGSSIDDSSSNPIVPRFGAGAKGSNMNTVKGLSGIKQTEEDFAADGRMVDDKNGLNRRR
PIKRMSSPELWEARQLIASGVLKVEDYPNFDPENDGVLAYEEEAEEEFDIEMNDEEAPFL
AGQTDAALGDVSPIKIVKNPDGSMQRAAMTQGALAKERREMKETQKRAAMDEDVPENLNQ
AWLDPMAAQDDRKLVADVRGQNVLAEDMPEWKKQSVGKAPQFGFAQKGSILEQRQSLPIF
KLREELIKAVNENQILVVIGETGSGKTTQMTQYLAESGYTTKGRIGCTQPRRVAAMSVAK
RVADEVGCLVGEEVGYAIRFEDCTSEDTVIKYMTDGMLLREALLDDKMSQYSVIMLDEAH
ERTIHTDVLFGLLKKCCAKRKDLRIIVTSATLDAEKFSTYFFECPIFTIPGRTFPVEVMY
TKAPESDYLDAALITVMQIHLTEPEGDILLFLTGQEEIDTGCGILFERVKALGPSVPDLH
ILPVYSSLPSEMQTKIFEPAPPGSRKCVVATNIAEASLTIDGIYYVIDPGFAKQKVYNPK
VGMDSLIVAPISQASARQRAGRAGRTGPGKCFRLYTEAAFKNEMLPTSVPEIQRTNLGMT
CLTLKAMGINDLGPGGFDFMDPPPAQTLVTALEQLYNLNALDEEGLLTRLGRKMAEFPLE
PPMSKMLIASVDLGCAEEILTIVAMLSAQNIFYRPKEKQGPADQKKAKFFQPEGDHLTLL
TVYEAWKANNFSSPWCFENYLQARSLRRAQDVRKQLLTIMDRYRLEVTSAGRNFNRIRRA
ITSGFFFHAAKKDPQEGFKTLVENTPTYIHPSSSLFQRQPDWVVYHELVLTSKEYMRECV
AIDPKWLVELAPRFFKQADARIMSKRKRMEKLEPLFDRFNEKDAWRLSKRRG
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgtctttagagccgaaaaacaacgtcacgtcggcgatgcaaaagctccaacac
ctctcgctcatcaataaagtcaccaaagaactggataagaacctcggcgtgaacgataag
acgttggcggagtttatcgtggatattgccaaggcgtcgaagtttgatccgaaaacgttt
tttaatgaattgcaaaagaacggggcggagttgccggaaccgttcgcgaacgagttagtc
gggacgattgaacggttagcgaataaaggtggcggaggtgcgagaggaggagaaaagaag
aaagttatcgtagaaaaaccgacgaaggagaatccatttccgggtttacaccgaccggat
gcggaagaacacgcgaagatgttgtcgcgcgagttgtacggcgacaggaacccgattgaa
aacgcgtgcgacgatccgaggttggataaaatgaatcccgggcgattagacgagaacaaa
aacgcgtcgagttcgggaagaggatacgatgattccgcgtttggacagaagaaaagaaag
tcaacatcagaaccggcaaaacggacgattcaaggcaaaccggaagtcgggaaggtatac
agaggtagcgtgacgaacgtgatggattttggagcgttcgtggaattagtcgagtttgtg
aataaaacggaaggtttagcgcacgtttccaaattaccaagagtatcgaacggaaattcc
gcgagagatgtcgtgcagagaggtaacccggtgtatgtgaaagtgttatcgctgacgaac
aataggatagctttgtccatgtcggacgtgaatcaagagactggagaggaagagacgagt
tacgcgaacaatcttccaccaccgccaccgagatcgaatccagcgccaccgcgcggcggt
gccgctggaagtagtattgacgatagtagtagtaatccgattgtgcctagatttggcgcc
ggcgcgaaaggttcgaatatgaatacggtgaaaggcttatctgggatcaagcaaaccgag
gaagattttgcggccgacggacgcatggtggacgataagaacgggttaaatcgacgtcgc
ccgattaagcgcatgtcttctcctgagttatgggaggcgagacaattgatcgcgagcggc
gttttgaaagtcgaagattacccgaactttgacccggaaaacgacggagtgttggcgtat
gaagaggaagcggaggaggaattcgatatcgaaatgaacgacgaagaagccccgtttctt
gccggtcaaactgatgcggctttaggcgacgtttccccgatcaaaatcgtgaagaatcca
gacggatctatgcaaagagcggcgatgacacaaggcgctttggcgaaagaacggagagag
atgaaagagacacaaaaaagagccgcgatggacgaggatgttccggaaaatctcaatcaa
gcgtggttagatccaatggcggctcaggacgatcgaaaactcgtcgcagacgttcgagga
caaaacgtacttgcggaggatatgccggaatggaagaagcaatctgtcgggaaagccccg
cagtttggtttcgcacaaaaagggtccattctcgaacagcgacaatcgttgccgattttc
aaattgcgtgaagagttgatcaaagccgtgaacgaaaaccaaatcttggtcgtcattggt
gaaactgggtcgggaaaaacgacgcaaatgacgcagtatttagcggagagcgggtacacg
accaaaggtcgaattgggtgcacgcagccgagaagagttgcggccatgtccgttgctaag
agagtcgccgacgaagttggctgtttagttggcgaagaagttggctacgccattcgtttt
gaagattgcacgagtgaagatacggttattaaatacatgactgatggtatgcttttaaga
gaagcgttgttggacgacaagatgtcgcaatattctgtcattatgctagatgaagcgcat
gaaagaacgatccatacggacgttttgttcggtttgttgaagaaatgttgcgccaagagg
aaagatttacgcatcatcgtcacctctgcaaccttggacgcggaaaaattttccacgtat
ttcttcgagtgcccaatttttaccatcccggggagaacctttcctgtcgaagtgatgtat
acaaaagctccagaaagcgattatttagacgcggcgttgattactgtcatgcaaattcac
ttgaccgaacctgaaggtgacattttgctcttcttaaccggtcaagaggaaattgacaca
ggatgcggaatcctctttgaacgcgtcaaggctttaggcccgtccgttccagatttgcac
atcttaccagtgtactcctccttaccgtctgaaatgcaaacgaaaatatttgagccggca
ccgccaggaagtcgcaagtgcgtcgtcgcaacgaacatcgcagaagcgtcgttgacgatc
gacggcatttactatgtcatcgatccaggtttcgcaaagcaaaaggtgtacaacccgaaa
gttggcatggattccttgatcgtcgcgccaatctcgcaagcgtccgcgagacaacgcgcg
ggacgagctgggcgtactggtccagggaaatgtttccgattatacaccgaagctgctttt
aagaacgaaatgttaccaacctcggtaccggaaattcaaagaacgaacctggggatgacg
tgtttaactttgaaagcaatgggtatcaacgatttaggaccgggtggattcgatttcatg
gacccgccaccggcgcaaaccttagtcacagcactcgagcagttatacaacttgaacgcg
ttagacgaggaaggattactcacccgtttaggtcgtaaaatggcagagtttccgctcgaa
ccgccaatgtcaaaaatgctcatcgcatcggtcgatctcgggtgcgccgaggaaattctc
accatcgttgccatgctttccgcgcaaaacatcttctaccgtccgaaagaaaagcaaggc
ccagccgatcagaaaaaagcgaaattcttccaaccggaaggcgaccatctcacgttgctc
accgtctacgaagcgtggaaagcgaacaacttctcctcgccgtggtgttttgaaaactac
cttcaagcgcgctctttgcgtcgtgcgcaagacgttcggaaacaactgttgacaattatg
gatcgctaccgcttagaagtcacctcggccggtcgcaacttcaaccgcatccgtcgcgcc
atcacttccggtttcttcttccacgccgccaaaaaagatccgcaagaaggcttcaaaacc
ttggtcgaaaacaccccaacatacatccacccctcctcctctttatttcaacgccaacca
gattgggtcgtttaccacgaactcgtcctgacgtccaaagagtacatgcgtgaatgcgtc
gccatcgacccgaaatggctcgtcgaactcgctccgagatttttcaaacaagcggacgcc
agaatcatgagcaagcgcaaacgcatggaaaagttagaacctctcttcgatagattcaac
gaaaaagacgcctggcgattgagcaagcggagaggttag
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