KEGG   Bathycoccus prasinos: Bathy07g02060
Entry
Bathy07g02060     CDS       T03089                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
bpg  Bathycoccus prasinos
Pathway
bpg03013  Nucleocytoplasmic transport
bpg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bpg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Bathy07g02060
  09122 Translation
   03013 Nucleocytoplasmic transport
    Bathy07g02060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpg03019]
    Bathy07g02060
   03041 Spliceosome [BR:bpg03041]
    Bathy07g02060
Messenger RNA biogenesis [BR:bpg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     Bathy07g02060
Spliceosome [BR:bpg03041]
 Complex C
  Other components
   EJC/TREX
    Bathy07g02060
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Bathy07g02060
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 PAC11 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_EML NBCH_WD40 Beta-prop_WDR36-Utp21_1st WD40_RFWD3 GYD DSE1_N Beta-prop_Vps41 eIF2A Beta-prop_WDR75_1st Beta-prop_NOL10_N B-prop_COPA_B_2nd KNTC1_N PROPPIN CFAP251_N TRM82_WD Beta-prop_DCAF12 Tricorn_2nd Cytochrom_D1 CotE
Other DBs
NCBI-GeneID: 19014695
NCBI-ProteinID: XP_007511903
UniProt: K8FE71
LinkDB
Position
7:join(425047..425583,425918..427156)
AA seq 591 aa
MFASFARRALSSSSSSPLSCCSYSRSFVTTKINGVSAGNLLRQTNDPLGAEAEELAFAPN
KSKHNQLFAPSDPIFMSQFLYNSEFIKKQMMESSTNSKSASGEKECAKMLAQIGGTMKSY
YKATTGEYDGIVIYSFPKNHDVHTFEQIVKSSGLIEKVYTTKLMTSEDGDVALRAAKELR
TVELLAHERKVNSLDFNLSGEYLASGSVDQTIRVWDAERALSGGGNTNNASRSRSTPTTN
NNNNIPNGRLLGHRDSVEQLRFSPVHTDELVSVSSDKTVKFWDVRQKKEVQSIPTHGENI
NVAWSPNGKTVCVGDKNDTLTFIDCTTMRAVKTASGKEVEVRHRKPISRKVFKETEVNEF
AWDREKESEKFFVLTGDGKVQCNVWDETKHTIKNVHEFVAHTGGCYTIAFDPSEKKTHFA
IGSADSLVSIWNIPVGYMCLRTVARHETPVRTVAFSHDGNFLASASEDDFIDICDPVSSK
RVCEPIFVRAPMNALAWHPKTHALAYAGDQEDLNKRKREALNLDEDLDAKASRMEEEERG
NAGGRGGASMEENDRDDNRRRRSGNIKPNVNKVQQVEGIVRLWIPKLVVDE
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgttcgcctcgttcgctcgcagagccttgtcctcctcctcttcctctcctcttagctgt
tgttcatactctcgttcattcgtcaccaccaaaattaacggagtgagcgcaggaaacctt
ttacgtcaaacgaacgaccctctcggggcggaagccgaggagctcgcgttcgcgccgaac
aaatcgaaacacaaccaactgttcgcgccttcggacccgatattcatgtcgcaattttta
tacaactccgagttcatcaagaaacaaatgatggaatcgagcactaacagtaaaagcgca
tccggagagaaagagtgcgcgaaaatgctcgcccaaatcggcggcacgatgaaatcgtat
tacaaagccaccacgggggaatacgacggaatcgtaatctattccttcccgaagaaccac
gacgtgcacacgttcgagcaaatcgtaaaatcgagcggtttgatcgaaaaagtgtacacg
acgaaactgatgacgagcgaggacggagacgtcgccttgagagcggcgaaggagttgaga
acggtcgagctcttagcgcacgaacggaaagtaaactcgctggattttaatttaagcgga
gagtatttagcgtccgggagcgtggaccaaacgatacgcgtgtgggacgcggagagggcg
ttaagtggtggtgggaacaccaacaacgcgagtcggagtcggagtactcctactacgaac
aacaacaacaacattccaaacggacgcttgcttggccatcgagattcggtggagcaactc
cggtttagtcccgtacacacagacgagctcgtgtcggtgtcctcggataagacggtgaaa
ttttgggacgttcggcagaagaaagaagtgcaatcgataccgacgcacggcgagaatatc
aacgtcgcgtggtcgccaaacgggaagacggtgtgcgtcggggataagaacgatacgttg
acatttatcgattgcacgacgatgagagcggtgaaaaccgcatctgggaaagaagtggag
gtgagacatcgaaaaccaatcagtcggaaagtgttcaaggagacggaagtgaacgagttc
gcgtgggatcgagagaaggagtcggagaagtttttcgttttgaccggagacggaaaggtg
cagtgtaacgtatgggacgagacgaagcacacgattaagaacgtgcacgaatttgtcgcg
catactggtgggtgttacacgatagcgttcgatccgagcgagaagaagacgcactttgcg
attggtagcgcggattcgttggtatcgatttggaatattccggttggatacatgtgtttg
cgaacggtggcgagacacgagacgccggtgagaacggtagcgtttagtcacgacgggaat
ttcttagcgagcgcgtcggaagatgattttatagatatctgcgatccagtgagttcgaag
agggtgtgtgaacctatatttgtccgagcgccgatgaacgcgctggcgtggcatccgaag
acgcacgcgttggcctacgcgggagatcaggaagatttaaataaacgaaagagagaggct
ttgaatttagacgaagatttggacgcgaaggcatcacgtatggaagaggaagagaggggt
aatgctggtggccgaggaggagcgtcgatggaggagaacgaccgagacgataatcgccgg
agaagaagcggaaatattaaaccgaacgtaaacaaagtccaacaagtggaaggtatcgtt
cgtttgtggattccaaagttggtcgtcgatgagtaa

DBGET integrated database retrieval system