KEGG   Bathycoccus prasinos: Bathy07g02280
Entry
Bathy07g02280     CDS       T03089                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
bpg  Bathycoccus prasinos
Pathway
bpg03030  DNA replication
bpg03410  Base excision repair
bpg03420  Nucleotide excision repair
bpg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bpg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Bathy07g02280
   03410 Base excision repair
    Bathy07g02280
   03420 Nucleotide excision repair
    Bathy07g02280
   03430 Mismatch repair
    Bathy07g02280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpg03032]
    Bathy07g02280
   03036 Chromosome and associated proteins [BR:bpg03036]
    Bathy07g02280
   03400 DNA repair and recombination proteins [BR:bpg03400]
    Bathy07g02280
DNA replication proteins [BR:bpg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    Bathy07g02280
  DNA Replication Termination Factors
   ELG1-RFC complex
    Bathy07g02280
Chromosome and associated proteins [BR:bpg03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    Bathy07g02280
DNA repair and recombination proteins [BR:bpg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     Bathy07g02280
  Check point factors
   HRAD17(Rad24)-RFC complex
    Bathy07g02280
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 AAA_16 AAA_22 AAA_14 RCF1-5-like_lid Viral_helicase1 DNAX_ATPase_lid RuvB_N TniB AAA_5 Mg_chelatase AAA_18 nSTAND3 ABC_tran AAA_24 RNA_helicase ATPase_2 AAA_assoc_2 AAA_11 AAA_19 AAA_3 DEAD AAA_28 NTP_transf_3 NPHP3_N bpMoxR NTPase_1 DUF815 AAA_25 MeaB T2SSE AAA_7 AAA_30 MipZ Phg_2220_C AAA_33
Other DBs
NCBI-GeneID: 19014717
NCBI-ProteinID: XP_007512300
UniProt: K8F282
LinkDB
Position
7:460157..461278
AA seq 373 aa
MNNPFFQRASEKQKETREQETANQPWIEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNL
LLSGPPGCGKTTSVHVLARTLLGDRYKDAVLELNASDERGIDVVRNKIKMFAQKKVTLPA
GRCKIIILDEADAMTKGAQQAMRRTMEIYSATTRFALACNLSDKIIEPIQSRCAIVRFSR
LSDKQVLERLVYVCEQEKVPHDARGLEAIVFCAEGDMRNALNSLQACHSGFQMVNQENVF
RVCDTPHPEVIGAILQHCLNGELDDACDRLLKLRKSGYSPQDLIKTIFQVCKRFDDKEMS
EYVKLEFLKIIGFFHVRISEGCASDVQLCGMVARLCGCSLEAKSGKSWSTPQKTLMEIRK
EGGSIGVSGSEFQ
NT seq 1122 nt   +upstreamnt  +downstreamnt
atgaataatccattcttccaacgcgcgagcgagaagcaaaaagaaacgcgagagcaagaa
actgcgaaccaaccgtggatcgaaaaatggcgaccgacgaaattagacgacatcgtcggc
cacgaggaaacgctgaaccaaatgcgagggatgattgaaaccggctcaatgccgaacttg
ttattatccggcccacctgggtgcgggaaaacaacctcggtgcacgttttagcgcggacg
ttactcggggatcggtataaagacgcggtgttggaattaaacgcgtcggacgagagaggg
atagatgtggtgagaaataaaatcaaaatgtttgcacaaaagaaggtgactttgccggcg
gggaggtgcaagattatcatcttggacgaagcggacgcgatgacgaaaggcgcgcaacaa
gcgatgcgaaggacgatggaaatatattcggcgacgacgagattcgcgttggcgtgtaac
ttgagcgataaaatcatcgaaccgattcagtcgcggtgcgccatcgtgagattttcgcgg
ttgagcgataaacaagttttggaaaggttggtgtacgtgtgcgagcaagagaaggtgccg
cacgacgcgagagggttagaggcgatcgtgttttgcgcggaaggggacatgagaaacgcg
ctgaacagtttacaggcctgtcatagtgggtttcaaatggtgaatcaagagaacgtgttt
cgagtgtgcgatacgccgcatccggaagtcataggcgctattttacaacactgcttaaac
ggagagttggacgatgcgtgcgatcgactgttaaagctgagaaagagcgggtattcgcca
caagatttgatcaagacgatttttcaggtgtgtaaacggttcgacgataaggagatgtcg
gaatacgtaaagttggagtttttgaaaatcatcggattttttcacgtgaggattagcgaa
gggtgcgcgagcgacgtgcagttgtgcgggatggtggcgaggttgtgtgggtgtagtttg
gaggcgaaaagtgggaaatcgtggtcgacgccacagaagacgttgatggaaatcagaaag
gaaggcggttcgataggcgtgagcggctcggagtttcaataa

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