Bathycoccus prasinos: Bathy07g03040
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Entry
Bathy07g03040 CDS
T03089
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy07g03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy07g03040
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Bathy07g03040
mRNA degradation factors
5'-3' decay
Lsm complex
Bathy07g03040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
19014793
NCBI-ProteinID:
XP_007512277
UniProt:
K8F2U0
LinkDB
All DBs
Position
7:complement(609536..609910)
Genome browser
AA seq
124 aa
AA seq
DB search
MTDTWQLSAVASLVEDIDKKILVVLRDNSNIVGTLRSFDQFANIVLENAVERMIVGTHYS
DVPLGLYIVRGENVVLMGDVDEAIELKGLTWVENDEIRRMKDAEMEADKMHGLIARNLDM
LLDD
NT seq
375 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacttggcaactttccgcggtggcgagtttagtcgaggacatcgacaagaaa
attctcgtcgttctgagagacaactcgaacatcgtcgggacgttgcgatcgttcgaccag
tttgcgaacattgttttagaaaacgcggtggaacgaatgatcgttggaacgcactattca
gacgtacctctcggattatacatcgtgaggggagaaaatgtcgttttaatgggagatgta
gacgaagccatcgagttgaaaggattgacgtgggtcgagaacgacgagattcgacgaatg
aaggatgcggaaatggaagcggacaaaatgcacggactgattgcgaggaatttggacatg
ttgttagacgactaa
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