KEGG   Bathycoccus prasinos: Bathy07g04700
Entry
Bathy07g04700     CDS       T03089                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
bpg  Bathycoccus prasinos
Pathway
bpg03018  RNA degradation
bpg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bpg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Bathy07g04700
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bathy07g04700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpg03019]
    Bathy07g04700
   03041 Spliceosome [BR:bpg03041]
    Bathy07g04700
Messenger RNA biogenesis [BR:bpg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Bathy07g04700
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Bathy07g04700
Spliceosome [BR:bpg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Bathy07g04700
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 19014959
NCBI-ProteinID: XP_007511925
UniProt: K8F136
LinkDB
Position
7:join(922752..922860,923038..923090,923201..923287)
AA seq 82 aa
MEASTTTSASKTPADFLKSIRGKRVVVKLNSGVDYRGILACLDGYMNIAMEHTEEYVNGQ
LKNKYGDAFIRGNNVLYISLAK
NT seq 249 nt   +upstreamnt  +downstreamnt
atggaagcatcaacgacgacgagtgcatcaaaaacacccgcagatttcttaaaatctatc
cgagggaaacgagtcgtcgtgaagttaaactctggagtggattatcgaggaattttagcg
tgcttagacggatacatgaacattgcaatggaacacacagaggaatacgtcaacggtcag
cttaagaacaaatacggcgacgcgttcatcagaggaaacaacgttttgtacatctctctc
gccaagtag

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