Bathycoccus prasinos: Bathy08g00830
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Entry
Bathy08g00830 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Bathy08g00830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy08g00830
03041 Spliceosome [BR:
bpg03041
]
Bathy08g00830
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Bathy08g00830
Spliceosome [BR:
bpg03041
]
Complex B
Other components
Prp19-related factors
Bathy08g00830
Complex C
Bathy08g00830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Mad3_BUB1_I
TPR_19
TPR_2
NRDE-2
RPN7
TPR_15
ARM_TT21_C
ARM_TT21
Phage_int_SAM_4
Motif
Other DBs
NCBI-GeneID:
19014062
NCBI-ProteinID:
XP_007511714
UniProt:
K8EZB0
LinkDB
All DBs
Position
8:142697..145387
Genome browser
AA seq
896 aa
AA seq
DB search
MDNEITDQDLIFEENVLQNPYVEDVWDKYIQFLVSTTNSSSTKLLTIHERAVKANPKSRN
LWLRYLRWRMNALKTASTLTSPLDEELEQQYNKLNLVFERCIANMESPGDFEIWELYIKS
LWQDQCSVTKTRRACDRALQSLDITEHSKFWSSLYLPFIRSSDKIPIETACRVYRRYVQF
EPQHVEEYISFLKNRGRVAESSQRLVEILNDETFVSLLNKSKHQMWLELCDLITKNVNNT
SVNNTEDGKKINVSAILRTAIKKFTDEVGKLWASLADYYIRRGLFEKARDIYEEGLESVM
TVRDFSLIFDAYAAFEENVLSSKMMQEEEEEEEENDEIELRLARLEHLMERRPILLSSVM
LRQNPHNVHEWLKRISLLSSSSSKEIVSTYSLAIQTVDAKASIGSISQVWIDFAKFYEVH
GDLDNARVIFEKATKSPNFKSVDELATIWCEYAEFELRNKNFKQALTLMKRVLFVNHNKE
KRINNASNTTKGEYDALLVQEKVHKSIKLWMFYCDLEESISPENARIVYERILDLRIATP
QIILNYAAMLQESKFFEDSFHVYERGVNLFKFPHSIDIWRAYLTQFVDRFQDKKVERARD
LFEQCCEQAPPKDCKEFFLEYAKLEEQFGLSKRAMDIYDQALTKMKSASDKIEVLDIYVK
RAMDFFGVGKVRSIYEKIIEDDDDDDDDNGTTKKKKKKNRLDDNSTKIICVKYAELEVSL
GEIDRARALYTHASQFSNPAQDGTFWGQWNDFEVKNGNEDTFRDMLRVKRSVAASFSQMH
FNMSVVEVPADALEPQAGGGGGKEGEEEEDLMKLLEREELENRNAAPIAGFVKSHVVGGD
RDDVPKNPEEIDLGFDDEEEEGDDDEPKTSVPSGVYGSLLSSGGKKREREDEEEEE
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggataacgaaatcaccgaccaagacttaatattcgaagagaacgtgctccaaaacccg
tacgttgaagacgtttgggataagtacattcagttcttagtatcaacaacaaattcatca
tcaacaaagcttctgacaattcacgagcgagccgtcaaagcgaatccaaaatcgagaaac
ttgtggttgagatatttacgatggagaatgaacgctttgaaaacagcttccactttaacc
tctcctttagatgaagaattagaacagcaatacaataaattgaacttggtgtttgagaga
tgcatagcaaacatggaaagtcccggagactttgaaatttgggagctgtacataaaatcg
ctgtggcaagatcagtgttcggtgacgaaaacgagacgcgcgtgcgatcgagcgttgcaa
tcgttagatatcacggaacattcaaaattttggtcctctctttatttaccgtttattaga
agttcagacaagatcccaatcgaaacggcgtgtagagtctatcggcggtatgtacagttc
gaacctcaacacgtggaggagtacatttcgtttctcaagaatcggggacgcgtcgcggaa
agtagtcaaagactggttgaaatcttaaacgacgagacctttgtctcattgttgaataaa
tccaaacatcaaatgtggctcgaactttgcgatttgatcaccaagaatgttaataatact
tctgtcaacaacaccgaagatggaaaaaaaattaacgtctcggccattctcagaacggcg
attaaaaagtttacggacgaagtcggtaagctctgggcatcgttagcggattattacatc
aggagaggtttgttcgaaaaggcgagagacatttacgaagaaggattagagtccgtaatg
acggtgagagatttttcgctcattttcgacgcctacgccgcctttgaagaaaacgtgttg
agttcaaaaatgatgcaagaagaagaagaagaagaagaagaaaacgatgagattgagctg
cgattagcacgtttagaacacttgatggaacgtcgaccgattcttttgtcgagcgtgatg
ttgcgacaaaacccgcacaacgtgcacgaatggttaaaacgcatttcgctcttgtcttct
tcctcgtcgaaagaaatcgtgtccacgtattctttagccattcaaaccgttgacgcgaaa
gcatcgatcggatcgatttcgcaagtgtggatagactttgcaaaattttacgaagtgcac
ggcgacttggacaacgcgagagttattttcgaaaaggcgacgaaatcgccaaacttcaag
agcgtagacgaactcgcgacgatttggtgcgaatacgccgagtttgaattacgcaataaa
aatttcaagcaagcgttgacgctcatgaaaagagtgcttttcgtgaatcacaacaaagaa
aaaagaataaataacgcgtcaaataccacaaaaggagagtacgacgctcttctcgtgcaa
gaaaaagtgcacaaatcgatcaagctgtggatgttttattgcgacttggaagaatcgatt
tcgccggaaaacgcgagaattgtgtacgaaaggatactcgatcttcgcatagctactccg
caaatcattctaaactacgcggctatgcttcaagaatcgaaattctttgaggattcgttt
cacgtgtatgagcgcggggtgaacctgttcaaatttccgcattctattgatatttggcgc
gcgtatttgacgcagtttgttgatcgatttcaagataaaaaagtcgagcgcgcgagagat
ttattcgagcagtgctgcgagcaagcgccgccaaaggattgcaaagagttctttttagaa
tacgcaaagttggaggagcagttcggtctctccaaacgcgcgatggacatttatgaccaa
gctttgacaaagatgaaatctgcgagtgataagattgaggtgttggatatttacgtcaag
cgcgcgatggacttcttcggcgtcggtaaagttcgatcaatctacgagaaaatcatcgaa
gacgacgatgacgacgacgacgacaacggtacgacaaagaaaaagaagaagaagaatcgt
ttggatgataactcgaccaaaatcatctgcgttaagtacgctgaactggaggtttctctc
ggtgaaatcgaccgagcgagagctttatacactcacgcgagtcagttctcaaatcctgcg
caagatggtaccttttggggtcaatggaacgacttcgaagtcaagaatggcaacgaagat
acgtttcgcgatatgttgcgtgtgaagagatccgtcgcggcttcgttttcgcaaatgcac
ttcaacatgtctgtcgtggaagtaccagccgatgctttggaaccacaagccggaggagga
ggaggaaaagaaggcgaagaagaagaagacttgatgaaactgctcgagagagaagagttg
gagaatagaaacgcggctccgattgctggattcgtgaaatcgcatgtggttggcggtgat
cgggacgacgttccaaagaatccagaagagattgatttaggttttgatgatgaagaagag
gaaggtgatgatgatgaaccaaaaacgtccgttccgtctggagtgtacggcagtcttctt
tcttctggtggaaagaagagagagcgagaggacgaagaagaagaagaataa
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