Bathycoccus prasinos: Bathy09g04680
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Entry
Bathy09g04680 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03013
Nucleocytoplasmic transport
bpg03015
mRNA surveillance pathway
bpg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Bathy09g04680
09122 Translation
03013 Nucleocytoplasmic transport
Bathy09g04680
03015 mRNA surveillance pathway
Bathy09g04680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy09g04680
03041 Spliceosome [BR:
bpg03041
]
Bathy09g04680
03009 Ribosome biogenesis [BR:
bpg03009
]
Bathy09g04680
03012 Translation factors [BR:
bpg03012
]
Bathy09g04680
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bathy09g04680
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Bathy09g04680
mRNA cycle factors
Stress granule specific factors
Bathy09g04680
Spliceosome [BR:
bpg03041
]
Complex C
Other components
EJC/TREX
Bathy09g04680
Ribosome biogenesis [BR:
bpg03009
]
Eukaryotic type
90S particles
Helicases
Bathy09g04680
Translation factors [BR:
bpg03012
]
Eukaryotic type
Initiation factors
eIF-4
Bathy09g04680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
19013974
NCBI-ProteinID:
XP_007511260
UniProt:
K8F434
LinkDB
All DBs
Position
9:883215..884423
Genome browser
AA seq
402 aa
AA seq
DB search
MGGGDHNKIDFDEDKRMKFETSKEVNITSTFDGMGIREDLLRGLYAYGFEKPSAIQQRAV
LPITSGRDVIAQAQSGTGKTSMISLSLCQMVDITQREVQALVLSPTRELAVQTEKTALAL
GNYMNVQVHACIGGRSIGEDIRKLDYGVHIVSGTPGRVFDMIKRRNLRTKNIKTLILDEA
DEMLNKGFKEQIYDIYRYLPPETQVVLISATLPNEVLDMTSKFMTDPIRILVKRDELTLE
GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFVNTKKKVDWLTEKMRKNNFTVSSMHG
DMPQKEREAIMAEFRGGTTRVLITTDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSG
RYGRKGVAITFLKAEDTQALRDIEQFYSTQIDEMPVNVADLI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggagaccacaacaaaatcgacttcgacgaagacaaaagaatgaaattcgag
acgtcgaaagaggtgaacatcacctccacgttcgatggtatggggataagagaagattta
ctgagagggttgtacgcgtacgggttcgaaaaaccatccgcgattcagcaaagagcggtt
ttgccaatcacgagcgggagagatgtcatcgcgcaagcgcaatcgggcaccgggaaaacg
agcatgatttccttgtccttgtgtcaaatggtcgatataacgcaaagagaagtgcaagct
ttggtgttatccccgacgagagaattagcggtacaaaccgagaaaacagcgttggcgctc
gggaattacatgaacgttcaagtgcacgcgtgcattggtggacgttctataggcgaagac
attcgaaaattagactacggcgtgcacatagtttccgggacgccggggagagtcttcgat
atgattaaaagacgcaacttgagaacgaagaatattaaaacgttgattctcgatgaagcc
gacgagatgttaaacaagggattcaaagagcaaatatatgacatatatcgatacctcccg
ccggagacgcaagtcgttttaatatctgcgacgcttccgaatgaagttttagacatgacg
tcaaagttcatgacggatccgattcgaattttagtcaagagagatgagttgacgttagaa
ggtatcaagcaattcttcgtcgcggtagaaaaggaggagtggaagtttgatacgctgtgc
gatttgtacgatactttgaccatcacgcaggcggttatatttgtaaacacgaagaaaaaa
gtagattggttgacggaaaagatgcgaaagaataattttacggtgtcgtctatgcatggc
gacatgccgcaaaaagagagagaagccatcatggcggagtttagaggtggaacgacgaga
gtattaatcaccacggacgtttgggccagaggtatcgacgtccaacaggtctctttggtc
ataaactacgatttgccaaacaaccgggaaaactacatccacagaatcggtcgttccggg
agatacggcagaaaaggcgtggcgattacattcttgaaagcggaagacacgcaggcgctg
agagacatcgagcagttttactcgacgcaaatcgatgaaatgcccgtgaatgtagctgat
ttgatttaa
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