KEGG   Bathycoccus prasinos: Bathy10g00890
Entry
Bathy10g00890     CDS       T03089                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
bpg  Bathycoccus prasinos
Pathway
bpg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bpg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Bathy10g00890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bpg03041]
    Bathy10g00890
Spliceosome [BR:bpg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    Bathy10g00890
 Complex C
   U5 SnRNP specific factors
    Bathy10g00890
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_EML EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_EIPR1 Ge1_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_WDR19_1st RMC1_N Beta-prop_DCAF12 Beta-prop_SCAP WD_LRWD1 Beta-prop_WDR35_TULP_N ATG31 Beta-prop_ELP1_2nd Beta-prop_Nup120_160 Mcl1_mid E7
Other DBs
NCBI-GeneID: 19013166
NCBI-ProteinID: XP_007510646
UniProt: K8EJK0
LinkDB
Position
10:complement(161756..163090)
AA seq 444 aa
MPPKKKTTKTTKARTPPPAETKKRKTRSKTPPPPETTTTKTEGEEEEEEDGNGAIVETTK
KRKTLTHPRKEGVSRRRTTSSLEAPIVLLEGHAGAVNDVKFSADGKFIATAGSDACVRLW
SYDFDDEDEDEEEEEKKPKKKKNNIENRFILRGHKNAVLSLAFLSDQFSIASASADKSIR
VWDVEYAEQVKKYDKSHSRAINCVSANERGTSLIVSASDDGFSKVFDARVAKKEVMQLKH
KYPVVSCAFRQDGLECATSGADGIVRTWDLRYATSFQETTNEEVRARVKNDVLCLDTKMT
ALTMKEGHEDIVTGLAYSYPDGFELASVGMDGKCNLFDLKPFRENADARVEMTYKGVQTD
FEKRVIKCCASSPSISANVSSKPTYVSSGSACGNVFVWDQKTGKIKYKLPGHKGSCLSVA
FHPFEPVLASAGADGKVFLGELAL
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgccaccgaagaagaagacgacaaagacgacgaaggcacgaacaccaccaccagcagaa
acgaagaaacgcaaaacgcgatcgaagacgcctcctcctcctgaaacgacgacgacgaaa
acagagggagaagaagaagaagaagaagatggtaacggtgcaattgttgagacgacgaag
aaacgaaagactttgacacatccgaggaaagaaggcgtgagccgaaggcggacgacgtcg
tctcttgaagcgccgattgttttactcgaaggacacgcgggtgcggtgaacgacgtgaag
tttagcgcggacgggaagttcatcgcgacggcagggagcgatgcgtgcgttcggttgtgg
tcgtatgattttgatgatgaggatgaagacgaagaagaagaagagaaaaaaccaaagaag
aagaagaacaacatcgaaaaccgattcattttaagaggacataagaacgcggttctttcg
ctggcattcctctccgatcaattttcgatcgcttctgcgagcgcggataaatcgatacgc
gtctgggacgtggaatacgcagagcaggtgaagaagtacgataagagtcactcgagagcg
ataaactgcgtgagcgcgaacgaacgagggacgagtttaatcgtctccgcctcggacgac
gggttttcgaaagttttcgacgcgagagtggcgaagaaagaggtgatgcagttgaagcac
aagtatccagtcgtgtcgtgcgcgttcaggcaagatgggttagaatgcgccacgtccggg
gcggacgggatcgtgagaacctgggatttacgatacgcgacgagttttcaagaaaccacg
aacgaggaagttcgagcgcgagtgaagaatgatgtgttgtgtttagatacgaaaatgacg
gcgttgacgatgaaagagggacacgaggatatcgtcactggtctcgcgtactcgtatcca
gacggattcgaactcgcctcggttgggatggacggcaagtgtaacttgttcgatttaaaa
cctttccgagaaaacgccgacgcgagagtcgaaatgacgtacaaaggcgtccaaaccgat
ttcgaaaagcgcgtgatcaagtgttgcgcgagttctccttcaatttcagcgaacgtgtcc
tcgaaaccaacgtacgtctcgtccggttcagcgtgcggcaacgtcttcgtctgggaccaa
aaaaccggcaagattaaatacaaacttcccggtcacaaaggcagttgtttatccgtcgcg
tttcatccgtttgaacccgtattagccagcgcgggtgcggatgggaaggtgttcttaggt
gagttagctttgtaa

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