Bathycoccus prasinos: Bathy10g01610
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Entry
Bathy10g01610 CDS
T03089
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy10g01610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy10g01610
03041 Spliceosome [BR:
bpg03041
]
Bathy10g01610
03009 Ribosome biogenesis [BR:
bpg03009
]
Bathy10g01610
03016 Transfer RNA biogenesis [BR:
bpg03016
]
Bathy10g01610
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bathy10g01610
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Bathy10g01610
Spliceosome [BR:
bpg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Bathy10g01610
Complex C
U4/U6.U5 tri-SnRNP related factors
Bathy10g01610
Ribosome biogenesis [BR:
bpg03009
]
Eukaryotic type
Pre-60S particles
Helicases
Bathy10g01610
Transfer RNA biogenesis [BR:
bpg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Bathy10g01610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
19013237
NCBI-ProteinID:
XP_007510451
UniProt:
K8EJ19
LinkDB
All DBs
Position
10:292497..295880
Genome browser
AA seq
1127 aa
AA seq
DB search
MAAGSSSPLDAGNDENDDEDKQQQHQQLNHPFQHAATTEPSEAAKLFRESVKKHVIETRT
ETTAARRKSRGDDALDEQGEEEKEEDEGEIKEDRDDDDTVARYQRQKRTSCVHEVAIPKS
LKLSAMEVSLLKTPTFSSEKYAKKYAFELDAFQSTAVAVLERGESVMVAAHTSAGKTVVA
EYAIAMAFRDKQRVIYTSPLKALSNQKFRELEEEFGDVGLMTGDTVINPNATCLVMTTEV
LRSMLYRGGEVIREVRWIIFDEVHYMRDRERGVVWEESIVFAPKNARLVFLSATLPNALE
FAEWVASLHEHCVHVVYTDHRPTPLQHYGFPKGGKGLHLIVDEVGNFRRENFEKLRAALK
NSGGNSGNSGGGRGGRGPGRGGRGGRGGGGRGNGQHGNTQDESDILRITRMIKNKEFFPV
IVFSFSRRECEEYAKQCKKIHFNDEEEAEAVEEVYTNALKCLDEEDRKLPAVQGILPLLK
AGIGIHHSGLLPCLKELVEILFSESLIKCLFATETFAMGLNMPARTVVFTAVKKFDGNEE
RVIAPGEYTQMSGRAGRRGKDDRGICIVMADEKMEESAMREMLQGKPQALNSEFKLSYYS
ILNLLKRASGTMDAEFVIQRSFHSYQHAKAVPGMKVERDRVREEIAGIDEKLKNVSKEST
EYGKLIERARRLEKELKRHELEPTRAMKFLTPGRLLKIRNGYDDFGWGCVVNAYQLSDEM
LRMRGIDPSTKDIAPETVVVDCLMRVGPGASEGILTPADVNIDAGGTILEGEKKKRKRNT
TEIVPVSLALVANIGELILELSDDLRDSTSRDAVYESVRTIVHTFKEKKGLRDVPSLDAV
NALGCVEVSYASMVQELESVREKIKTHQLYEAGDDEEEMYYEKQKTLRAKMKDKNAPKED
FDEKAMFEKKATLEERSRVLSSRIKTSELSKFRDELSSRSKVLRKLNHVDAEGVVLPKGR
CACEIDTADELLATELMFNGAFAKATPRELVALCSMFVPTEKSNQKPTIPKNLEVPIKGV
LDAAKLIANTQLEQKLEIDVEKYVDSFRTFLVEIVHDWAGGKTFSEVLLRTDLFEGTIVR
AMRRLDELMLELGRAAMACGDENLREKFEKGAELLRRGIVFAPSLYV
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggttcttcgtctccgttggacgcaggaaacgacgaaaacgacgacgaggac
aaacaacaacaacaccaacagttaaatcatccgtttcaacacgcggcgacgacggaacca
tccgaagcggccaaattgtttcgggaaagcgtgaagaaacacgtgattgaaacgagaaca
gaaacgacggcggcgaggaggaaaagcagaggtgacgatgctttagacgagcagggggag
gaggaaaaggaggaggacgaaggtgagattaaagaggatcgcgatgatgatgacacggtc
gctcgataccagcggcaaaagcgaacgagttgcgtgcacgaagtggctattccaaagtct
ctcaaattaagtgccatggaggtatcgctattaaagacgccgacattttcatcggagaaa
tacgcgaagaagtacgcgttcgagttagacgcgtttcagtcgaccgcagtggcggttttg
gaacgaggcgagtcggtgatggtggcggcgcacacgtcggctgggaagacggttgtcgcg
gaatacgcgatagcgatggcgtttcgcgataagcaaagagtgatatacacgtcgccgttg
aaagcgctgtcgaatcaaaagtttagagagttagaagaggagttcggggacgttggtttg
atgacgggggatacggtgattaatccgaacgcgacgtgtttggtgatgacgacggaggtt
ttgaggtcgatgttgtacagaggcggggaggtgattcgagaggtgcgatggatcatcttc
gacgaggtgcactacatgagagatcgagagcgaggggtggtgtgggaagagagcatagtg
ttcgcgcctaaaaacgcgcggttagtttttttatcggcgactttgccgaacgcgttggag
tttgccgagtgggtggcgagtttacacgaacattgcgttcacgtcgtgtataccgaccat
cggccgacgccgttgcaacactacggttttccgaagggcgggaaaggattgcatttaatc
gtcgacgaggttgggaatttcaggcgggagaatttcgaaaagttacgcgcggcgttgaag
aatagtggtggtaatagcggaaatagcggcggaggacgaggaggacgaggcccgggacga
ggaggacgaggaggacgaggaggaggaggacgaggtaacggacaacacggcaacacgcaa
gacgagtcggatattttacgcatcactcggatgattaaaaacaaagagttcttccccgtg
atcgtgttttccttctctcgaagagaatgcgaggagtacgccaaacagtgcaagaaaatt
cacttcaacgacgaggaagaggcggaagccgtggaagaagtgtacacgaacgcgttgaag
tgtttagacgaagaagatagaaaattacccgcggtgcaaggaatattacccctgttgaaa
gcgggcattggaattcaccactcgggtttactcccgtgcttgaaagagctcgtggaaatc
ctcttcagcgaatccttgatcaaatgtctctttgcgacggagacgttcgcgatgggtttg
aacatgcccgcgcgaacggtcgtttttaccgcggtgaagaaattcgacggaaacgaagaa
cgcgttatagcacctggagagtacacgcaaatgtccggacgcgcgggtagacgaggtaaa
gacgatcgaggcatatgcatcgtcatggctgatgaaaaaatggaggaatccgcgatgcgc
gaaatgttacaaggcaaaccgcaggcattaaattcagagttcaagttgagttactattct
attttgaacctgttaaaacgagcaagcggaactatggacgcggaattcgtcattcaacga
tcgtttcactcgtaccagcacgccaaagcggttccaggaatgaaagtcgaacgcgaccga
gtgcgagaagaaattgccggaatagatgaaaaactcaaaaacgtgagcaaagaatccacc
gagtatggaaaactcatcgaacgggcgcgtcgactggaaaaagagttgaaacgtcacgaa
ctcgaaccgacaagagcgatgaagtttctcacgccggggagattgctgaaaatccgcaac
ggttacgacgatttcggatgggggtgcgtcgtaaacgcctatcaactctcggacgagatg
ttgagaatgcgagggattgatccttcgacgaaagatatcgcaccggaaacggtcgtcgtt
gattgcttaatgcgcgtaggaccgggtgcttcggaaggtatattgactccagcagatgtc
aacatcgacgccggcgggacgattttagaaggtgaaaagaaaaaacgtaaacgaaacacg
acggaaatcgttcccgtcagtctcgcgttggtggcgaacatcggtgaactcattttagaa
ctgtccgacgatcttcgcgattcgacgtcgagagacgcggtgtacgagagcgttcgcacg
attgtgcatacgttcaaggagaagaaaggtttgcgggacgtgccgagtttggacgccgtg
aacgcgctagggtgcgtcgaagtttcgtacgcatcgatggttcaagaactcgagtctgtt
cgcgaaaagattaaaacacatcaactgtatgaagctggagacgacgaagaagagatgtat
tacgaaaaacaaaagacgctcagagcgaagatgaaggataaaaacgccccgaaagaggat
tttgacgagaaagcgatgtttgagaagaaagcgactcttgaggaacgatcgagagtgtta
tcttcgcgcataaaaacgagcgaactgtccaagtttcgcgacgaattatcttcgcgttca
aaagttttacgcaaactcaaccacgtggacgctgaaggcgtcgttttacccaaaggccga
tgcgcgtgcgaaatcgacacggcggatgaacttttggccacggagttgatgttcaacggc
gccttcgcgaaagcgacgccgagagaactcgtcgcgttgtgttccatgtttgttccaacg
gaaaagtcgaaccaaaagccaaccataccgaaaaatctagaggtgccaatcaaaggcgtt
ttagacgcggcgaaactcatcgccaatacgcaactggaacaaaaactcgaaatcgacgtg
gaaaaatacgtcgattcgtttcgaacgttcttggtggaaatcgtgcacgactgggcggga
ggaaaaacgttttcggaagtgttgttgcgaacggatttgtttgaaggcactatcgttcgc
gccatgcgtcgattggacgaattgatgttagagctcggcagagcggcgatggcgtgcggg
gatgagaatttacgcgagaagtttgaaaaaggagcggagttgttgcgaagaggcatcgtc
ttcgcgccttcgctgtacgtgtag
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integrated database retrieval system
