KEGG   Bathycoccus prasinos: Bathy11g00540
Entry
Bathy11g00540     CDS       T03089                                 
Name
(RefSeq) WD repeat-containing protein 61
  KO
K12602  WD repeat-containing protein 61
Organism
bpg  Bathycoccus prasinos
Pathway
bpg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bathy11g00540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpg03019]
    Bathy11g00540
Messenger RNA biogenesis [BR:bpg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     Bathy11g00540
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_TEP1_C NBCH_WD40 DSE1_N Beta-prop_Aladin Tricorn_2nd Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_Vps41 ASA1 Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_WDR19_1st WD40_RFWD3 PEP5_VPS11_N Beta-prop_EIPR1 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C CFAP251_N WD40_like TRM82_WD WD_LRWD1 Beta-prop_SPT8 WDR54 KNTC1_N Cytochrom_D1 B-prop_COPA_B_2nd HmuY Beta-prop_SCAP Beta-prop_Nup120_160 Beta-prop_WDR19_2nd PepSY Nucleoporin_N PAC11 Beta-prop_DCAF12 CFAP43_N
Other DBs
NCBI-GeneID: 19012740
NCBI-ProteinID: XP_007510226
UniProt: K8EKK8
LinkDB
Position
11:complement(94574..95548)
AA seq 324 aa
MVKISPLSSKESAHADSVWSVCFASSSSSENDLIFTGSLDETVSAWKASDSGEIEKKEDY
IGHTLGAVSVAASDSGLVASSALDSMIRVWELESSETRTVIECAPSESWEIAFEPGKNSK
HIAVAGGVSGTVKLFSTVANSTDSTSAHQTHNDAKFSYEVPVREEHQNRFVYSVSYSSNG
KYIACGTTNGTVGLFDAESGKVLGQFDGHKLPVRSVCFSPDSKCLYTASDDGFIHIYDVT
SKQLIDSFSGHTSWVLSIAASPDGNSLVSGSADKSVKLWDVSSRQCIQIDKSHKDAVWDV
SFNTHGTRVASVSSDKSVSIFTYN
NT seq 975 nt   +upstreamnt  +downstreamnt
atggtcaaaatttctcctctttcttcgaaagaaagcgctcacgcggactccgtgtggtcc
gtctgctttgcttcgtcttcgtcttctgagaacgatttgattttcactggatcgctcgac
gaaactgtcagcgcgtggaaagccagcgattctggagaaattgagaagaaagaagattac
attggacacacgttaggtgctgtttcagttgctgcgagtgattctgggctggtggcgagt
tctgcgttagattcgatgattcgcgtatgggaactagaatcgtcagagacaagaacagtt
attgaatgcgcaccgagcgagtcttgggagattgcattcgagcctggcaaaaattcgaaa
cacatcgcggtggcaggcggggtctctggcaccgtcaagctcttctcaacggtagcaaat
tcgaccgatagtacttctgcgcatcaaactcataacgacgctaaattttcttacgaagtg
ccggtacgagaggaacatcaaaataggtttgtttattctgtgtcttattcaagcaatggt
aaatacattgcgtgcggtacgaccaatggtacggtcggtctctttgatgcagagagcgga
aaggtcttaggacagtttgatggtcataagttgccagtgcgaagcgtatgcttctccccg
gactcgaagtgtttgtataccgcctcagatgatggttttatacacatatacgacgttact
agcaaacagttgattgattcgttttctggtcacacatcgtgggtcttatccatagcggcc
tctcctgatgggaatagcttagtatctggttccgcagataaatccgtaaagttgtgggac
gtttcctcgcgccaatgtatccaaatcgataaaagtcacaaggatgcagtttgggacgtg
agttttaacacccacggtactcgcgtagcgtctgtttcgagcgataagagtgtctccatt
tttacgtataattga

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