Bathycoccus prasinos: Bathy11g00960
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Entry
Bathy11g00960 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy11g00960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy11g00960
Enzymes [BR:
bpg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
Bathy11g00960
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Bathy11g00960
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Bathy11g00960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
19012776
NCBI-ProteinID:
XP_007510236
UniProt:
K8EKL6
LinkDB
All DBs
Position
11:complement(163659..165452)
Genome browser
AA seq
597 aa
AA seq
DB search
MSDSSIKSLVVTRATLNTETPIAGVEIVPYIVTRKSDGTSTTDDIPRENAIDGQYLRYKW
YRSGRKSRTAVCSVHPAEVATLQNVHNRQYHCDGECFKRGWREWMRHRIATGEEEVERRQ
PTRATKYNVANEQKKEGEFGSRENLNKEDASAAEEAKAAAVPPWIEVSTDRTYLVKPTDV
GHVLKLEIQPCDAKAPAPNERGVAETVVTSRVIPAPSPPKRNLVPIQKNDAVEPGSFTVM
SYNVLADVYCTTEMYGYAPPWALSWYFRRQNILKELVQMDADILCLQEVQSDHFEDFFQG
ELAKYGYSSVYKKKTAQIFSEGKYVIDGCAIFFKKDKFALIKKYEVEFNKAALSLAESLV
GSGGSKKEALNRLMKDNIALIVVLEALDSQQRQQTQQTGKRKLLCVANTHIHANTDHNDV
KLWQVHTLLKGLEKIAASAEIPMVACGDFNSTPGSAAHGLLTRGMVDNNHPELQIDPLGI
LRPASKLSHPLPLVSAYSSALRRDNRLLESEALERLRDRVDPRTAEPMFTNCTKDFFGAL
DYLFYTEDTLCPVGLLELPGEKDARAKYGGLPNTQWSSDHVSLMAEFQWGPAAMNGY
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattcttccattaagagtttagtcgtcacgcgcgcaacgttaaacacggaaacc
ccaatcgcgggcgtggagatcgtcccgtacattgtgacgcgcaaaagcgacgggacgtcg
acgacggacgatatccctcgagaaaacgccatcgacggacaatatttgcgatataagtgg
tatcgctcggggaggaagtcgagaacggcggtgtgctcggtgcacccggcggaagtggcg
acgttgcagaatgtgcacaataggcagtaccactgcgacggggagtgtttcaagagagga
tggcgagagtggatgcgtcacagaatcgcgactggagaggaagaggtggagaggagacaa
ccgaccagagcgacgaagtataacgtggccaacgagcaaaagaaggagggtgaatttggg
agtcgcgagaacttgaacaaggaagatgcttcggcggcggaagaggcgaaagcagccgcg
gtgcctccatggatcgaagtgtctacggatagaacgtatttagtcaaaccaacagatgtt
ggacacgtgttaaaactcgagattcagccgtgcgacgcgaaagcgccggcgccgaacgag
agaggggtggcggagacggtggttacctcgagggtgattcccgcgccgagtcctccgaag
aggaatttggtcccgattcaaaagaacgatgcagtagaacctggttcgtttacggtcatg
tcctataacgttttagcggacgtgtattgcacgacggagatgtacgggtacgccccgcct
tgggcgctgagttggtacttccgacgccagaatattttgaaagagttggtccaaatggac
gcggacattttgtgtttgcaagaggtacaatcggaccacttcgaagactttttccaaggc
gaattggcgaaatacgggtattcgtccgtgtataagaagaagacggcgcagattttctcg
gaagggaagtacgtcatcgacggatgcgcgattttcttcaagaaggataaattcgcgttg
attaagaaatacgaggtggagtttaacaaagccgcgttgtcgttggcagaaagtctcgtc
ggttccggcggctccaaaaaagaagccttgaaccgattgatgaaggataacatcgcgttg
atcgtcgtcttggaagctctcgattcgcaacagcgacaacagacgcaacaaactggaaaa
cggaaacttttgtgcgtggccaacacgcacattcacgccaacaccgaccacaacgacgtc
aagctttggcaagtgcacacgttgttgaaaggtttggaaaaaatagccgcctcggcagag
atccctatggttgcctgcggtgatttcaactccacgcccggttccgccgcgcacgggttg
ttgactcgaggtatggtggacaacaaccaccctgagttgcaaatagatcctctcgggatc
ttgcgcccagcctcgaaactctcccacccgttaccgctcgtctcggcgtactcatccgct
ttacgaagagacaatcgcttgctcgaatctgaagcgctcgagcgtttgcgcgaccgcgtg
gaccctcgaacggcggagccgatgtttacaaactgcacgaaggatttttttggcgctttg
gattacttattctacaccgaggatacgttatgcccagtcggacttcttgaacttcccgga
gagaaagatgcgcgagctaaatacggcggtttaccgaacacgcagtggagttccgatcac
gtctctttgatggcggaattccaatgggggccagccgccatgaatggctattaa
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