KEGG   Bathycoccus prasinos: Bathy11g01880
Entry
Bathy11g01880     CDS       T03089                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
bpg  Bathycoccus prasinos
Pathway
bpg03020  RNA polymerase
bpg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bpg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Bathy11g01880
  09124 Replication and repair
   03420 Nucleotide excision repair
    Bathy11g01880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bpg03021]
    Bathy11g01880
   03019 Messenger RNA biogenesis [BR:bpg03019]
    Bathy11g01880
   03400 DNA repair and recombination proteins [BR:bpg03400]
    Bathy11g01880
Transcription machinery [BR:bpg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     Bathy11g01880
Messenger RNA biogenesis [BR:bpg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Bathy11g01880
DNA repair and recombination proteins [BR:bpg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Bathy11g01880
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N SprB
Other DBs
NCBI-GeneID: 19012868
NCBI-ProteinID: XP_007510173
UniProt: K8FA86
LinkDB
Position
11:complement(341218..341667)
AA seq 149 aa
MEGTCSGRYGFIVCITHIENVSEGIITDDGTARAKFAVEYDCVAYRPFKNEVLDAVVTQV
NKFGFFAEAGPLQLFVSNSLVPDDVKYVTDENCYKSDDGQITIGVDCEVRVKIVGMRIDA
NDIFCIATIKEDYLGLIGYAEGDAAVGAV
NT seq 450 nt   +upstreamnt  +downstreamnt
atggaaggcacgtgttcgggacggtacggatttatcgtctgcatcacgcacatcgagaac
gtttcggaagggatcatcaccgacgacggcacggctcgagcaaagttcgcggtggaatac
gactgcgtcgcgtaccggccatttaagaacgaagtgttggacgcggtcgtgacgcaagtg
aataagtttggtttcttcgcggaagccgggccgttgcagttgttcgtgagtaattcgttg
gtcccggacgacgtgaaatacgtgacggatgagaattgttacaagtcggacgacgggcag
attacgattggggtagattgtgaagtgagggtgaagattgtcgggatgagaatagacgcg
aacgatattttctgcatagccacgattaaggaggattacttggggttgattggttacgcg
gagggagatgcggcggttggcgcggtataa

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