Bathycoccus prasinos: Bathy11g01950
Help
Entry
Bathy11g01950 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bpg
Bathycoccus prasinos
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpg03016
]
Bathy11g01950
Enzymes [BR:
bpg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Bathy11g01950
Transfer RNA biogenesis [BR:
bpg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Bathy11g01950
Prokaryotic type
tRNA splicing ligases
Bathy11g01950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
19012875
NCBI-ProteinID:
XP_007510418
UniProt:
K8FAV9
LinkDB
All DBs
Position
11:357704..359296
Genome browser
AA seq
530 aa
AA seq
DB search
MSGGGVEKKDVEMMKLRKDDSADDEKQRTYEEECSYIENRDPTSYVVKIGFVANMRVPGI
FYVNKFLAGLTFEELKQHAERGRAGGFLPAVKQIANVASLPGIVGRSIALPDVHSGYGFA
IGNVAAFDVNDPKAVVSPGGVGFDINCGVRLVRTNLTEAEVQPLKEEVAQALFDHIPVGV
GGKGIIPVDAKTLDTALEMGIDWCVREGYAWIEDKERCEENGRMLNADPSKVSQRAKKRG
LPQMGTLGAGNHYAEIQVVDEIYDQFAAKKMGIDKIGQVVVMIHSGSRGLGHQVATDALV
EMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMACAANYAWVNRQSMTFLCRQAFAKT
FNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYT
GQPVLVGGTMGTCSYVLTGTEKGMHETFGSTCHGAGRARSRHNSRQKLSYEQVLENLKTK
GISIRVASPKLVMEEAPESYKDVTEVVDTCHDAGISKKCVKLRPIAVIKG
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggcggcgttgagaagaaagacgtggagatgatgaagttgagaaaagatgat
tctgctgatgatgagaaacaacgcacgtacgaagaggaatgctcgtacattgaaaaccga
gatccgacgtcgtacgtggttaaaatcgggttcgtggcgaacatgcgcgtgcctggaata
ttctacgtgaacaaatttctcgccggattaacgttcgaggagttgaaacaacacgccgaa
cgaggtcgcgcgggcggatttttacccgcggtgaagcaaatcgcaaacgtggcgtcgttg
ccgggtattgtcggtcgatcgatcgcgttaccggacgtgcactctgggtatgggtttgcc
attgggaatgtagcggcgtttgacgtgaacgacccgaaagcggtcgtttctccaggaggc
gtcggtttcgatatcaattgcggcgtgcggttagtgaggacgaatttgaccgaagcggag
gtgcaaccgctgaaagaggaagtcgcgcaggcgttgttcgaccacattcccgttggcgtc
ggtgggaaaggtatcatccctgtcgacgcgaagacgttggacacggcgttagagatgggc
atagattggtgcgttcgagaagggtacgcgtggatcgaagataaagaacggtgcgaagaa
aacggacgaatgttaaacgccgatccgagcaaagtttcgcaacgagcgaaaaaaaggggt
ttgccgcaaatgggcacgttaggtgctggaaatcactacgcggaaatccaagtcgtggat
gaaatttacgaccagttcgccgctaagaaaatgggtatcgataaaatcggccaagtcgtg
gttatgattcactcgggctcgcgagggttaggccaccaagtcgctacggacgccctcgta
gaaatggaaaaagcgatggcaaaagatggattagaactgaacgatcgccaattagcctgc
gcgcggatcaactcgcaagaaggtaaagactacttagccgccatggcgtgcgccgccaac
tacgcctgggtcaacagacagtccatgaccttcctctgtcgccaagcgtttgcaaaaacc
ttcaacaaaaccgccgaacagctggacatgcacgtcgtctacgacgtctcccacaacatc
gccaaaatagaagaacacatcgtcgacggcgagttgaaaacgttactcgttcaccgcaaa
ggttctacccgcgcgtttcccccgcaccatccgctcatcccggtcgattaccaatacacc
ggccaacccgtcctcgtcggcggcaccatgggaacctgctcctacgtcctcaccggtacc
gaaaaaggcatgcacgaaaccttcggctccacctgtcacggcgccgggcgcgcccgaagt
cgacacaactctcgacaaaaactcagttacgagcaagtcttggaaaatttgaaaaccaaa
ggcatatccatccgcgtcgcctcgccaaagttagtcatggaggaagcgccggaaagttat
aaagacgtcaccgaagtcgtcgatacgtgtcacgacgctggaattagtaaaaaatgcgtc
aagttacgaccgattgcggttattaaagggtag
DBGET
integrated database retrieval system
