Bathycoccus prasinos: Bathy12g02360
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Entry
Bathy12g02360 CDS
T03089
Name
(RefSeq) ATP-dependent RNA helicase DDX39
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03013
Nucleocytoplasmic transport
bpg03015
mRNA surveillance pathway
bpg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Bathy12g02360
09122 Translation
03013 Nucleocytoplasmic transport
Bathy12g02360
03015 mRNA surveillance pathway
Bathy12g02360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy12g02360
03041 Spliceosome [BR:
bpg03041
]
Bathy12g02360
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bathy12g02360
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Bathy12g02360
Spliceosome [BR:
bpg03041
]
Complex C
Other components
EJC/TREX
Bathy12g02360
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Bathy12g02360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19012401
NCBI-ProteinID:
XP_007509762
UniProt:
K8EKY7
LinkDB
All DBs
Position
12:complement(join(428582..429651,429868..430087))
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AA seq
429 aa
AA seq
DB search
MAAEEEEEELLDYEEEDVAKATTLTASKDGEKKGEKNKKKGYVGMHSTGFRDFLLKPELL
RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQLDPSPGEVGAV
IICHTRELAYQISHEMTRFSAHMPNVKCAVIYGGVNIKTQREELKANMPNVIVATPGRLK
VLAQEGTISLKKCAHFILDECDKCLEKLDMRADVQEIFKLTPHDKQVMMFTATLSKELRP
VCKKFMNDPMEIFVDDETKLTLHGLVQHYVKLEEQEKNRKLTDLLDALQFNQVVIFVSSV
ARCTALDKLMQECNFPSIAISRAMSQEERLLRYQSFKDGNKRILVATDLVARGIDIERVN
IVINYDMPGDADTYLHRVGRAGRFGTKGLAISFVSSSEDSDVLSKVHERFEVSIDGLPDE
IDTSSYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgaagaagaggaagaagagttgctcgattacgaagaggaagacgtcgctaaa
gcgaccaccctaacggcatcaaaagatggcgaaaagaaaggggaaaagaataagaaaaaa
gggtacgttggaatgcattccaccggattccgggacttcctcttaaagccggaattgctc
cgagcgatcgtggattgcggtttcgaacatccatccgaagtacaacacgagtgcatcccg
caagcgattctcgggatggacgtcctgtgccaagcaaaatccgggatgggaaaaaccgcg
gtatttgtgattacggtgttacaacaactcgacccgtcacctggggaggttggcgcggtg
attatctgtcacacgagagaactcgcgtatcaaatctcgcacgagatgactcggtttagc
gcgcacatgccgaacgtgaaatgcgcggtaatttacggtggggtgaatattaagacgcaa
agggaggagttaaaagcgaacatgccgaacgtgatcgtggcgacgccggggaggttgaag
gtgttggcgcaagaagggacgatcagtttgaagaagtgcgcgcatttcatcttggacgag
tgcgataagtgcttggagaagttggatatgagggcggacgtgcaagagatttttaagttg
acgccgcacgataagcaagtgatgatgtttaccgcgacgttgagtaaagaattgagaccg
gtgtgtaagaagtttatgaacgatccgatggagattttcgtggacgacgagacgaaattg
acgttgcacggtttggtgcaacattacgtcaagttggaagagcaagagaagaatagaaag
ttgaccgatttgttggacgcgctgcagtttaaccaggttgttatttttgtcagcagtgtg
gcgaggtgcacggcgttggataagttgatgcaggagtgcaactttccgagtatcgcgatt
tcgagagccatgtcgcaagaggaacgcttgttgagataccaaagttttaaagacgggaat
aagagaattttagtggccacagatttagtcgcgcgaggtatcgatatcgagcgcgtgaac
attgtgattaactacgacatgcccggggacgcggatacgtatttgcacagagttggcaga
gccggtcgattcgggacgaaaggtttggcgatcagcttcgtctcgagctcggaagattcc
gacgtgttgagcaaagtgcacgagagatttgaagtcagcatcgacggtctgccggatgag
attgacacgagctcgtacatgccgtcctaa
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