Bathycoccus prasinos: Bathy16g00460
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Entry
Bathy16g00460 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Bathy16g00460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpg03041
]
Bathy16g00460
03009 Ribosome biogenesis [BR:
bpg03009
]
Bathy16g00460
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bathy16g00460
Spliceosome [BR:
bpg03041
]
Complex A
U1 snRNP components
U1 related factors
Bathy16g00460
Complex B
Bathy16g00460
Ribosome biogenesis [BR:
bpg03009
]
Eukaryotic type
Pre-60S particles
Helicases
Bathy16g00460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
Med15_M
Motif
Other DBs
NCBI-GeneID:
19011361
NCBI-ProteinID:
XP_007508693
UniProt:
K8F670
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All DBs
Position
16:complement(join(97930..99673,100023..100102))
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AA seq
607 aa
AA seq
DB search
MVVGTVSSAGLPPGWQEVHAEGQVYYWNTTTNATTYDRPTIESAAMMKAPDMSYLGTSGA
HFDQFGADDSFGGLDYNAPPPDAYGKHQGLTIDNTFGSETQSGKEYRKMHEITVKAPRGV
QVPDPMQDFDDGKGTWPRSLLDAVKRAGYEKPTAIQSQSWPIALSGHDIISVAKTGSGKT
CGYLFPGFINIQKRGGRSQGGGPMAIVLAPTRELATQIQDEALKFGSAVACYSVVVYGGA
SKGYQLRSLRSRPQIVVATPGRLNDFLEMGAIDLRESSYVVLDEADRMLDMGFEPQIRKI
LQKVPSERQTLFFTATWPKAVIRVATAILTNPVQVNIGDTDQLVANKDITQKIEILGGFD
KQKRLMDILNNPPCPQPLKALIFCSTKKMCDQLGRAVGGLAAVIHGDKDQRERDWVMNSF
KSGKSPVLIATDVAARGLDVKECNLVINFDFPGQIEDYVHRIGRTGRAGAKGWAHSFLDP
GEGNMARKLIPILRDANQDISPELEEQARRGGGSGKAPKGGNGWGGGRGGGRGRGGYGGR
GGGGYGGGYGGGGPDRGGYGGGRSNPFSHGGGGGGYGGGGGGYGGGGGGYGGGGGGGGGY
GGGPGGY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgggcacggtgtcttcggccggtttgcctcccgggtggcaggaagtccacgcg
gaagggcaggtgtattactggaacacgacgacgaacgcgacgacgtacgatcgaccgacg
atcgaatctgcggcgatgatgaaagcaccggatatgagctatttagggacgagcggcgcg
cacttcgatcaattcggcgcggacgattcgttcggcgggttggattacaacgcgccgccg
ccagacgcgtacgggaaacaccaagggttaacaattgataacacgttcgggagcgagacg
caatctgggaaagagtacaggaagatgcacgaaattacggtgaaagcgccgcggggggtt
caagtgccggatccgatgcaagattttgacgacgggaaagggacgtggccgaggagtttg
ttggacgcggtgaaacgcgcagggtacgagaaaccaaccgcgattcaaagtcagagttgg
ccgattgcgttgagtgggcacgatattatttccgtcgcgaaaaccgggagcgggaagacg
tgcgggtacttgtttcccgggtttataaacattcaaaagagaggcgggagaagtcaaggc
ggcggaccgatggcgatcgtgttagcgccgacgagagagttggcgacgcagattcaagac
gaggctttgaagtttgggagcgcggtggcgtgttattccgtagtcgtgtacggcggcgcg
agtaaagggtaccagttgagaagtttacgatcgcgaccgcaaatcgtggtggccacgccc
gggcgtttgaacgatttcctagaaatgggcgcgattgatttgagagagagctcgtacgtc
gttctcgacgaagccgatcggatgttggatatgggttttgaaccgcaaatcagaaagatt
ttacagaaagtgccgagcgagcgccaaacgttgttctttaccgccacgtggccgaaagca
gtcattcgcgtcgccacggctattttgaccaatccagttcaagtgaacatcggggatacc
gatcagttagtcgcgaataaagacatcacgcaaaaaattgaaatcttgggtggctttgat
aaacaaaagcggttgatggacattttgaacaatcctccgtgtccgcagccactgaaagcg
ttgatattttgctccacgaagaagatgtgcgatcagttgggcagagccgtcggtggttta
gccgcggtcattcacggcgacaaagaccaacgcgaacgcgattgggtgatgaactcgttc
aaatctggtaaatcgccggtattgatcgccaccgacgtcgcggcgagaggcttggacgtc
aaggagtgcaacttggtcatcaactttgacttccccggtcagattgaagattacgtccac
agaatcggtcgcaccggtcgagctggtgccaaagggtgggcgcactcgttcttagacccg
ggagaagggaacatggcgagaaagttaattccaatcttaagagacgcgaaccaagatatc
tcgcccgagctggaagagcaagcgaggcgcggcggaggcagcggaaaggcaccaaaagga
ggaaacggatggggcggcggacgcggcggtggtcgaggtcgaggaggttacggcggtcga
ggcggcggcggttacggcggcggttacggcggcggcggcccggatcgcggtggctatggt
ggcggtcgatcgaatccattcagtcacggtggcggtggcggcggctacggtggcggtggc
ggcggctacggtggtggcggcggcggctacggcggaggtggtggcggcggcggcggctac
ggtggaggtccgggcggctattaa
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