Bathycoccus prasinos: Bathy16g00870
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Entry
Bathy16g00870 CDS
T03089
Name
(RefSeq) CCR4-NOT transcription complex, subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy16g00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy16g00870
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Bathy16g00870
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Bathy16g00870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DDHD
HicB
Motif
Other DBs
NCBI-GeneID:
19011153
NCBI-ProteinID:
XP_007508717
UniProt:
K8EQW6
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Position
16:complement(join(182672..184573,184940..185071))
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AA seq
677 aa
AA seq
DB search
MATIRKLQAEIDKTFRKVDEQQEVFQQIFDRLKECDSSLKEKYEADLKKELKKLQKFRDQ
IKNWSADTAIKDKTSLNEYKRKIEIDMERFKMVERQSKTKAFSKHGLEKMENETPEQKRR
RETKEWLSTVVEELSNQSDAFEAEIEVLQLEAAKPSKRKGKNTNNGNEEKVNRLEESVQR
HKAHTLNLEIMMRLVENETLPAEEADDVRDLIEDYLERNQEDFDEFDVVDDMYESLNLEE
LATKESVKVVTNVKQLHEESGQDASSGSPQQLQTALSGGSSKIEPPKPRVVPPAPVLSPK
AAAAAAAQQEQQSVNQWGSRFPAPKGLDADGVGSGNGGNNAAVGSGSAAAAGKPIPRPNN
NSNAPPGPGGIKDGNAAQQAFPPGPRPLSSDANQQQSVAEAANAAFTANEVFDNPSQGAR
SLNEMSTSMRRGLSGSGMQSGSGSAQSINNASNNSINSTLALQQQQQQQQQQQQQQQQQQ
QQQQQRQQQQQQQQQQQRGGGGASAASTATVAHGDPSSRLRLLEASASSRLLPSASDGVW
TRRVRRAPQAPIPPSYPTTLLDGNGNNLYPVLENPALFERLDADALFFSFYHQQGTPQQY
LAARELKRANWRFHKKYSAWFARREEPKVSNEEFEQGAYVYFDHAVSRDEYGSVRGWCQR
SKPDFLFEYSHLENELQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgatacgtaagctccaggctgaaatcgacaagacctttcgtaaggtggacgag
cagcaggaggtgtttcagcaaattttcgatcggttgaaggagtgcgattcgagtttgaag
gagaaatacgaggcggacttgaagaaagagctgaaaaaactgcaaaaattccgggaccag
atcaaaaactggtccgcggataccgcgattaaagacaagacgtctttgaacgaatacaag
cggaaaattgaaatcgacatggagaggtttaaaatggtcgaaaggcaatcgaagacgaaa
gcgtttagtaaacacggattggagaagatggaaaacgaaactccggaacaaaagaggaga
agagagacgaaggagtggttgtccacggtggtggaggagttgtcgaatcagtcggacgcg
ttcgaggcggagattgaggtgttgcagttggaagccgcgaaaccgagtaaaaggaaaggg
aagaatacgaacaacgggaacgaagagaaagtgaacagattggaagagtcggtgcaaaga
cacaaggcgcacacgctgaatttggaaatcatgatgcgattggtggagaacgagacgttg
ccggcggaagaggcggacgacgtgcgggatttgatagaagattatttggagaggaatcaa
gaagatttcgacgagtttgacgtcgtggacgatatgtacgagagtttaaatttggaagag
ttggcgacgaaagaaagcgtgaaagtggtgacgaacgtgaagcagttacacgaggagtcc
ggacaagacgcctcgtccggatcgccgcagcagttgcaaacagccttgagcggaggatcg
tcgaagattgaaccgccaaagccgagagtggtaccgccggcgccggtgttgagtccgaaa
gccgcggccgcggcagctgcgcaacaggaacaacaaagcgtcaatcagtggggatctcgg
tttcccgcgccgaaaggtttggacgccgacggcgtggggtctgggaacggcgggaataac
gccgcagtcgggagcggttccgccgccgccgccgggaaacccataccgagaccgaataac
aattccaacgcgccaccgggaccgggaggtatcaaagacggcaacgccgcgcaacaagcg
tttccacctggaccgagaccgttatcatccgacgcaaatcaacaacaatccgtcgcggaa
gccgccaacgcggcgtttactgcgaacgaggtcttcgacaacccgagtcaaggcgcgcga
tcgttgaatgaaatgtccacgtccatgcgacgaggattatctggaagcggcatgcaatcc
ggatccggtagcgcccaatccataaacaacgcgagcaataatagcatcaactccaccttg
gcgctacaacaacaacagcagcaacaacaacagcagcagcagcaacaacaacaacaacag
caacaacaacaacaacggcagcagcagcaacaacaacagcagcaacaacaaagaggagga
ggaggggcgagcgccgcctccacggctaccgtcgcgcacggcgacccgtcctcgcgtctc
cgtctcctcgaagcttctgcctcctctagacttctcccgtccgcctcggacggcgtctgg
accagacgcgttcgccgcgcgccccaagcgccgattccgccttcctacccgaccactctc
ctcgacggcaacgggaacaatttatacccagttttggaaaacccggctttattcgaacgc
ttagacgccgacgcgctcttcttctccttctaccaccaacaaggcacccctcaacagtac
ttagccgctcgagagttgaaacgcgccaactggcggttccacaaaaaatacagcgcctgg
ttcgctcgacgagaggaaccgaaagtctccaatgaagaattcgagcaaggcgcgtacgtc
tacttcgaccacgccgtaagccgggacgaatacggaagcgtccgagggtggtgtcagcga
agcaaaccggactttctgttcgaatactcgcatctggagaacgagttacaatga
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