Bathycoccus prasinos: Bathy18g00030
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Entry
Bathy18g00030 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy18g00030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy18g00030
03012 Translation factors [BR:
bpg03012
]
Bathy18g00030
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bathy18g00030
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
Bathy18g00030
Translation factors [BR:
bpg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
Bathy18g00030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
DEAD
HA2_C
OB_NTP_bind
HA2_N
Ank_2
ATPase
ResIII
AAA_19
Ank
nSTAND3
AAA_25
AAA_22
DUF6643
Motif
Other DBs
NCBI-GeneID:
19010794
NCBI-ProteinID:
XP_007508173
UniProt:
K8ERS7
LinkDB
All DBs
Position
18:3316..6975
Genome browser
AA seq
1219 aa
AA seq
DB search
MSGDRGFRGGRGGRGGRGQIIRPVLEGTRIAIDKQLAEFRANVDCDEIVFPADLSNHDRA
IVHTECKKLGLKSKSHGKGEERRVHVTKPDKFIAVDADDSRTLNLSEKGARQLNEYFSKF
PPSSNELEMASRGTLDVAWEDENTKSRAENNNNNATTTTARKPYTDAFLTTFGNNVDYKR
LHEELEHKRTHVHELAQISMKRQTLPVFKYKDEIIERVNANQVVLLAGSTGCGKTTQVPQ
FLLDDCWANGKPAKIICTQPRRISAMTVSDRIASERGENIGEGTVGYQIRLESKISKACS
LLLVTTGVLLRRLTSEGADAYLSSLTHIIIDELHERDRFADFLMIVLKDVLPKYPNLKLI
LMSATMREDLFSNYFDDCPVIKVPGFIHPVREYHLEDVLAFTNWGGNNAGLANPQPSKHR
KVDASSSFSSQQQQQQQQQQEPSTSEASEMMRAAIENAFVAPSDETFDWLLQCAAQSKDE
DLVNVQHSATGATALMAAAGRNRTMEVSQLLQLGANVNLKSQNGMLASDWAERFEHEDLA
SQLRELESTPGNNDVAMMEEDGAARDGSFDGPVVLDEAALMRLSKYQLESDPDEVDVDLV
CSLVKHVHEKNRAKPDGAILVFLPGWDEISKIKDALSDQAGLTDVQIMPLHSMVSPQDQR
KVFQKPPRGVRKVVLSTNIAETAVTIDDVVYVIDSGKLKEKGYDAYTAVSTLHQTWISKA
SATQRKGRAGRVRPGEVYRLFSKSRFEAFAEFQLPEMQRSPLEEICLQVKMMQETLRGMI
HSNGAPSPTCASFLKRAVEAPLPQAVDSAVTLLIDIGAFTSAEEDERITRLGRHLADLPL
HPRVGKMLLYASLLGVLDPILTIACAGAYRPPFIIGTDSGRQNANRAKKGFSDALGGGSD
HLAIVQAFKEWEVACRNGRQAENQFLWNNSLSGSTLHMIKGMRMQLITALTQRGFIQNLQ
SASYNTNATSLVRSVLAVGMYPLVGRMLPQCRAPTLGTLKGERVRIHPGSVNARFEFSQD
ELENTSSSTTTLACFEEITRNESNMYVRDSTLISGTSLVLIANTVKVEADPPVVDPLTGE
SFPKPGVPSALLNVDDWISFRVPLTQIAQLCTLRLRLFKAFASRVERTKKPLAANLQQCL
HTTSIVLADSDHNLLGARNQYIQRGGGGRGGGRGFYSGGRGGNNQNFVPPPPSSSQFNGS
GDGRGGGRGRGRGRGRGRY
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgatagagggtttcgaggaggaagaggtggaagaggagggagaggacaaatc
attcgtccggttttggaaggaacgcgaatcgccatcgacaaacaactcgcggaatttcgc
gcaaacgtcgattgcgatgagattgttttccccgcggatttatccaatcacgatcgagcg
atagtgcacacggagtgtaagaagttgggattgaaatctaaatcgcacggcaaaggggag
gagagaagagtacacgtgacgaagccggataagttcatagccgtcgatgcggacgattcg
agaactctgaatctctcggaaaagggggcaagacagttgaacgagtatttttccaagttt
ccaccgtcatccaacgagctcgaaatggcatcgagaggaacgttagatgtcgcgtgggag
gatgaaaataccaaatctcgagccgaaaataacaacaacaatgccacgactactaccgcg
aggaaaccgtacacggatgcgtttttaactactttcggcaataacgtcgattacaagcgt
ttgcacgaagagttagaacacaaacgaacgcacgtccacgaactcgctcagatttcaatg
aaacgacaaactctcccggtattcaaatacaaagatgaaatcattgaaagagtgaacgcg
aaccaagtcgttctgctcgcgggttccaccggctgcggcaagacgacgcaagtgccgcag
tttttactcgacgactgctgggcaaatgggaaaccggcgaaaattatatgcactcaaccg
cgaagaatatcggcaatgaccgtttctgatcgtattgcgagcgaacgcggcgaaaatatc
ggcgaaggaaccgtagggtatcagattcggcttgaatcgaagatttcgaaagcgtgtagt
cttttgctcgtcacgacgggtgttttgctcagacgtttgacttctgaaggcgcggatgcg
tatttatcgtcattaacacacataatcatcgacgaacttcacgaacgcgatcgattcgct
gattttttgatgattgttttgaaagacgtgttgccaaagtatccaaacttgaagctgatt
ttgatgtccgcgacgatgcgagaagatttgttttcgaactatttcgacgactgcccagtg
attaaagttccaggatttatccacccagttcgtgaataccatttagaagatgttctagcg
tttacaaattggggcggaaacaacgcggggctcgcgaatcctcagccgtcaaagcataga
aaagtagatgcttcttcttctttttcttctcaacaacaacaacaacaacaacaacaacaa
gaaccttcgacatcggaagcttcggagatgatgcgtgcggcgattgaaaatgccttcgtt
gcgccgtcggacgaaactttcgattggttgttacaatgcgcggcgcaatcgaaagatgaa
gatttggtgaacgtgcagcattccgcgacgggcgcgacggctttaatggctgcggctggt
agaaatcgcacgatggaagtcagtcagctcttgcaactcggcgcaaacgtaaacttgaaa
tctcaaaacggcatgttagcatcggattgggcggagcgattcgaacacgaagatttagcc
tcacaacttcgcgagttagaaagtactccaggtaataacgacgtcgccatgatggaagaa
gacggtgcggcgagagatggttcttttgatggaccggtagttttagacgaagccgctttg
atgcgcttatcaaagtaccagttagaatctgatcccgatgaagttgacgtagatttagtt
tgctcgctcgtcaagcacgtgcacgagaagaatcgagcgaaaccagacggcgctatactt
gtgtttttgccgggatgggatgaaatttcaaagattaaggatgcgctgagcgaccaagcc
ggtctgaccgatgtccaaatcatgccactccactcgatggtgtctccgcaagaccaacgc
aaagtgtttcaaaaaccaccgcgaggcgttcgtaaagttgtgctatcgacgaacatcgcg
gaaacggcggtcactattgacgacgtcgtatacgtcatcgattctggaaaactcaaagag
aaaggatacgacgcgtacacggccgtttcaacgttgcaccaaacgtggatttccaaagct
tccgcgacgcaaagaaaaggtcgcgccggtcgagtccgtccaggagaagtgtatcgctta
ttttcaaagtcgcggttcgaagcctttgcggagtttcagctcccagaaatgcagcgttca
ccattggaagagatttgcttacaagtaaagatgatgcaggaaacccttcgcggtatgatt
cacagcaacggcgccccgtcgccaacgtgtgcctcgtttttgaaacgagctgtggaagcc
ccccttccgcaagctgtagattctgccgtaacgcttctgattgatattggcgccttcacg
tctgccgaggaagacgaaagaataacgcgattgggtcgtcatctagctgatttgccttta
catccccgcgtcggcaaaatgttgttgtacgcctcgctcctcggtgttttggatccaatt
ctaaccatcgcgtgtgcgggcgcatacaggcctccctttatcatcggaacggatagtgga
cgtcagaatgcgaatcgcgccaagaaaggtttttccgatgcgcttggtggaggatccgat
cacttggccatcgttcaagcgttcaaagagtgggaagtcgcgtgtcgaaacggacggcaa
gccgagaatcaatttttgtggaacaactctttgtcggggtcgactttgcatatgattaaa
ggcatgcgcatgcaattaataacggcgttgacccagcgaggtttcatccaaaacttacaa
tctgcgtcgtacaacacgaacgcgacttcgttagtgcgttctgttttggccgtaggcatg
taccctctggttggaagaatgcttcctcaatgtcgagcgccaacgcttgggactttgaaa
ggtgaacgcgtacgaattcatccaggctcggtgaacgcgcggtttgaattttcgcaagac
gaattggagaacacttcgtcgtcaacaacaacgttggcgtgtttcgaagagattacgcga
aacgaatcgaacatgtacgtgagagattcaacgctgatatcgggaacgagtttagttttg
attgcaaatacggtaaaagttgaagccgatcctccggtagtcgatccgctcaccggcgag
tcgtttccgaaaccaggcgtaccatcggctcttttaaacgtcgacgattggatttcgttt
cgagtgccattgacgcaaatcgcgcagttatgcacgctgcgattgcgtttattcaaagcg
ttcgcttctcgcgttgaacgcacgaaaaaaccgctcgcagcgaatttacaacagtgttta
cacacaacgtctatcgtattagcggactctgatcacaacttgctcggcgctagaaaccaa
tacatacagagaggcggaggaggaagaggcggtgggagaggcttttattccggtggacga
ggcgggaataatcaaaactttgtgcctccaccgccttcttcttctcagtttaacggttct
ggcgacggtagaggcggaggtcgtggacggggtcgtggaagaggacggggaaggtactga
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integrated database retrieval system
