Bathycoccus prasinos: BathyCg00282
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Entry
BathyCg00282 CDS
T03089
Symbol
rpoB
Name
(RefSeq) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BathyCg00282 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpg03021
]
BathyCg00282 (rpoB)
03400 DNA repair and recombination proteins [BR:
bpg03400
]
BathyCg00282 (rpoB)
Enzymes [BR:
bpg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BathyCg00282 (rpoB)
Transcription machinery [BR:
bpg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BathyCg00282 (rpoB)
DNA repair and recombination proteins [BR:
bpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BathyCg00282 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
20314157
NCBI-ProteinID:
YP_009056862
UniProt:
K8F1G5
LinkDB
All DBs
Position
CP:complement(5626..9108)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSLFRQNSAFPNLVETQRNSFRRFLERGIGEELLAISKIHGDRAQRVHKQKLKKLQTTKT
APTESFLDKRLATEAVEHRDFTIEFKTEDYYFKLPKHTPESAVANVTTYEAPLIVPAIIR
FPLLRLSAYVPVKFCNLPLMTTSGNFIINGSPRVVVHQMVRSPGVYFKRQTDAKNRDTFM
VSFLASYGSWLRFETKRGPRVDNIMYVKIDNLRPLPLTLLLQAVGFSYADVIDAVYDPLL
LMDTRDAVGWVKSRNEALIVMMSLLFPTRPATVKAGKKFLYDTLFNPRRYSFSKVGRKQV
NRKLRLTRQTDYLTLTPEDLLAGVDCLIRLKAGQTHLLDDIDHLKNRRVRLSGELIQTQF
RIGVNRLERVVKTRLNDPAVAGSFFRDPIEQALLARKAKKRRAMKQTKTGSQLTRKLHAT
GRMRHSKEKLRQKSNDIAVNSRHARWTSFVRTSVISSTMREFFGSSQLSQFMDQTNPLAE
VTHKRRLSSLGPGGLHRDRAGLIVRGIHPSYYGRVCPIETPEGKNAGLVGSLASFAQINE
DGFVMAPYYKMQKEQIRPNTQGFFLLTACYEDQAVLASGDVNLAKPRVSTRLRRAFTEHA
PKKIDYLGLCPIQFMSIATALIPFLEHDDANRALMGSNMQRQAVSLLRSERAFVGTGLEG
RITRDSGSLLVAKQTGYVTYADAQRIEYVTPKDDPTGTQFKLIAHSVELESYHRSNQDSC
LHHRPLVEANTWVQKGDCLADNTATFGGELALGRNIFVGYMPWEGYNFEDAVLVSERLVF
DDLFTSIHIERYDVETARLQDGQEYFTPAVANSEYLDELGIVKVGTWVESGDVLVGKISP
QKDSETTPEQKLLRAIFGGTPRQVKETSFCVSHGVSGRILDRRFNCTSKKFNAKEEANAF
ESTGEVFIYLVQKRRLQIGDKVAGRHGNKGIVSNILPRADMPFVQNGQPLDMVLNPLGVP
SRMNVGQIFECLLGLAAHTLEKNFKVVPFDEMHGDEISRGFVYQYLYEARLMTQQKWLFR
PSAPGKTIVFDGRTGSPFEQPVTVGYPYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRS
KHGGQRLGEMEVWALEGFGAAYTLQELLTIKSDDMNGRTDAFMAMIRGTLLPKPGIPESF
KVLVSELRGLCLDMTLSQIR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagcctttttcgccaaaactcagcgtttccaaatttagtggaaacgcaacgtaatagt
ttccgtcgttttcttgaacgtggcattggggaagaattactcgcaatttcaaaaattcat
ggggatcgtgcccaacgcgttcataaacaaaaactcaaaaaacttcaaacaacaaagacc
gcacctacggaatcttttttagataaacgcttagctaccgaagccgtagaacaccgcgac
tttacgattgaatttaaaactgaagattactattttaaactaccaaaacatacacctgaa
agtgccgtggcaaatgtgacgacatatgaagccccattgattgtaccagcaattattcga
ttcccacttttacgtctttctgcgtatgtacccgtaaaattttgtaatcttccattaatg
acaacatcagggaattttattattaacggatcaccacgtgtagttgtgcaccaaatggta
cgctcgcctggtgtgtacttcaaacgtcaaacggatgccaaaaaccgtgatactttcatg
gtgagcttcttagcatcctatggatcgtggcttcgttttgaaacaaaacgtggtccacga
gtggataacatcatgtatgtcaaaattgataacttacgaccactcccattaacactttta
ctgcaggctgtcgggttttcatatgctgatgttattgacgcagtttatgacccattgcta
ttaatggatacacgtgatgcagtcgggtgggtgaaatctcgaaatgaggcactcattgta
atgatgagtttacttttcccaacccgtccagcaaccgtaaaagctggtaaaaaattcctc
tatgatacactttttaatccacgccgatatagttttagtaaagtgggccgaaagcaagtt
aaccgtaaattacgcttaacacgtcaaaccgattatttaactttaacaccagaagatctt
ttagctggagtcgattgccttattcgtttaaaagcagggcaaacacatttattagatgat
attgatcatttaaaaaaccgacgtgttcgactctccggtgaattaattcaaacgcaattc
cgtatcggggtgaatcgtttagaacgtgtggtaaaaacacgcttaaatgatcccgctgtg
gcagggtcttttttccgagacccaatcgaacaagcgcttctcgcacgcaaagcaaaaaaa
cgtcgtgcaatgaagcaaacaaaaacgggaagtcagcttacccgtaaattacacgccaca
gggcgcatgagacactcaaaagaaaagctgcgccaaaaaagtaacgatattgctgtaaac
tcacgccatgctcgatggacctcatttgtccgtacgtccgttatttcatctacaatgcgt
gaattttttggttcaagccaattatcacaatttatggaccaaacaaaccccttagctgaa
gtgacacataaacgtcgtttaagttcacttgggccgggtggtttacaccgtgatcgagcg
ggacttattgtacgtggtattcacccaagttattatggtcgtgtgtgtccaattgaaact
ccagaaggaaagaacgccggtttagttggctcattagcctcgtttgcccaaattaacgag
gatggttttgtaatggccccttactataaaatgcaaaaagaacaaatccgaccgaatacc
caaggattctttttattaaccgcctgttatgaagatcaagctgttttagcctcaggtgat
gtcaatttagcaaaaccacgtgtttcaacacgtttacgccgtgcctttacagagcatgct
ccgaaaaaaattgattaccttggattatgtcccattcaatttatgtcaattgcgactgcg
ctcattccttttttagaacatgacgatgcgaaccgtgcgttaatgggatccaatatgcag
cgtcaagcggtatcccttcttcgatcggaacgtgcatttgtaggaactgggttagaaggt
cgtatcacacgtgattcaggtagtttacttgttgcgaaacaaacaggatatgtgacatat
gcagacgcacaacgcattgaatacgtcacaccaaaagatgacccaactggaacacagttt
aaattaattgcacatagcgtggaattagaatcctaccaccgttcaaaccaagattcatgt
cttcaccatcgcccattagtcgaagcaaatacatgggttcaaaagggagattgcttagcc
gataacaccgcgacattcggtggtgagttagctcttggtcgaaatattttcgttggctat
atgccatgggaaggatacaactttgaagatgctgtccttgtaagtgaacgcttagtgttc
gatgatctcttcacctcaattcatattgaacgatacgatgttgaaacagcccgtttacaa
gatggccaagagtactttacgccggcagtcgccaatagtgaatatttagatgaacttgga
atcgtaaaagttggaacatgggttgaatctggggatgtccttgttggaaaaatttcgcca
caaaaagattccgaaacaacgccagaacaaaaattactccgcgccatttttggcggtaca
ccacgccaagtaaaagagacatctttttgtgtgtcacatggagtgtctggccgaatttta
gaccgtcgttttaactgtacatcgaaaaaatttaatgcgaaagaagaagcgaatgccttt
gaatccacaggggaagtatttatttatttagtccaaaagcgtcgtttacagattggtgac
aaagtagcagggcgtcacggaaataaaggaattgtgtcaaacattcttccacgtgcagat
atgccatttgttcaaaatggccaacctttagacatggttcttaacccattaggagtacca
tcacgtatgaacgtgggtcaaatttttgaatgtctcttaggattagcagcccatacatta
gagaaaaactttaaagttgtcccatttgatgaaatgcacggggatgaaatttcgcgaggc
tttgtctatcaatatttgtatgaagctcgcttaatgacacaacaaaaatggttattccga
ccaagtgcaccaggaaaaaccattgtctttgatgggcgtaccggttcaccatttgaacaa
cctgtcactgtgggttacccatatattttaaagttagttcaccttgtagatgataaaatc
catgcgcgttcaactggaccatattcattagtgacacagcaacctcttggaggccgttca
aaacacggtggtcaacgtcttggagaaatggaagtttgggcactcgaaggatttggagca
gcctacactctccaagaactattaacgattaaatcggatgatatgaatggtcgtactgac
gcattcatggctatgatcagaggaacgcttttaccgaaaccaggaatcccagaatcgttc
aaagtccttgtttctgaattacgcgggttatgtcttgatatgacactttcacaaattcga
taa
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