Paraburkholderia phymatum: Bphy_0426
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Entry
Bphy_0426 CDS
T00704
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphy_0426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_0426
Enzymes [BR:
bph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bphy_0426
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bphy_0426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Sacchrp_dh_NADP
DegT_DnrJ_EryC1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACC69619
UniProt:
B2JDA2
LinkDB
All DBs
Position
1:complement(485125..486693)
Genome browser
AA seq
522 aa
AA seq
DB search
MSFDSLGLSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALRRGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK
RQNLLFSATFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLI
KQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLV
ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI
EKLIKRAVPQEVIAGYEPDPNARPEPIQRRGQGGGGRQPRQGQGQGQGQGQRQPQGQRQA
QGQQKREGSAGANNGASRGGHRTSGDKPNDKPKQHAKPQGQKPAHARNDAPRHQDKPRAS
AHEGSAHTPHAAHAPRKPRNANPGALLGGKPRSDAPRGQRGN
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgctggtccgcgcagtcaatgaactcggc
tacacgtcgccgactccgatccagcagcaagccattcccgccgtgctcaacggcggcgac
ctgctggccggcgcgcagactggcaccggcaagacggccggcttcacgctgcccatcctg
caacgtcttctcacgatgccgcccgcgccaggcggcaagcgcgtggtgcgcgcgctgatc
ctcacgccgacccgcgaactcgccgcacaggtcgaggaaagcgtgcgcgcgtacggcaag
tatctgaagctcaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcagatcgat
gcactgcgtcgcggcgtcgacatcgtcgtcgcgacgccagggcgtctgctcgatcacatg
cagcagaagaccatcgacctgtcgcatctcgagatcctcgtgctcgacgaagcggaccgc
atgctcgatatgggcttcattcacgacatcaagcgcgtgctcgcgaagctgccgccgaag
cgccagaacctgctgttctcggccaccttctcggacgagatcaaggcgctcgccgacagc
ctgctcgatgcccccgcgctgatcgaagtcgcacgccgcaacacgacggccgaaaccgtc
gcgcagaagatccaccctgtcgaccgcgatcgcaagcgcgaactgctcacgcatctgatc
aagcagcacaactggtttcaggtgctcgtcttcacgcgcacgaagcacggcgcgaaccgc
ctcgccgagcagctgacgaaggacggcatcagcgcgctcgccattcacggcaacaagagc
cagtccgcgcgcacccgggcgctggcggagttcaagaacaacacgttgcaggtgctggtc
gccaccgatatcgcggcgcgcggcatcgacatcgatcaactgccgcacgtcgtcaacttc
gatctgccgaacgtgccggaagactacgtgcaccgcatcggccgcacgggccgcgcgggg
gcgacgggcgaagcggtgtcgctggtgtgcgtcgacgaactccaactgctgaaggacatc
gagaagctgatcaagcgcgccgtgccgcaagaggtgatcgcgggctacgagccggatccg
aacgcgcgccccgagccgatccaacgccgcggacaaggcggcggcggccgtcagccgcgt
caaggccaaggtcaagggcaggggcagggtcaacgccagccgcaaggccagcgccaggct
cagggccagcagaagcgcgaaggttcggcgggtgcgaacaacggtgcgtcgcgtggtggt
catcgcacgtcgggtgacaaacccaacgacaagccgaagcagcacgccaagccgcaaggc
cagaagccagcccacgcgcgcaacgatgcgccgcgtcatcaggacaaaccgcgcgcgagc
gcgcatgagggtagcgcgcacacgccgcatgcggcgcacgcaccacgcaagccgcgcaat
gcgaacccgggcgccctgctcggcggcaagccgcgtagcgatgcgccgcgcggtcagcgc
ggcaactga
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