Paraburkholderia phymatum: Bphy_0818
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Entry
Bphy_0818 CDS
T00704
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphy_0818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_0818
03009 Ribosome biogenesis [BR:
bph03009
]
Bphy_0818
Enzymes [BR:
bph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bphy_0818
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bphy_0818
Ribosome biogenesis [BR:
bph03009
]
Prokaryotic type
rRNA processing factors
Bphy_0818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACC70007
UniProt:
B2JFH9
LinkDB
All DBs
Position
1:complement(916407..919685)
Genome browser
AA seq
1092 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFREGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMSQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGTQGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRTPAPAAATVEVKPATGGFIGWLKGLFGMQPAAPAPAPAPVEKAAKPVRGERT
ERGERTGERGGDRNRNRRSGGAGGRDAAGRGEGTATQGRQGQPSQRGERQEREPREAREP
RGGREPREGRETREPREAREARPERVERGQERAERAEAAEARGERQERGERRERGERAER
GERRKQQTEAAEALSQNEAQADVAAQAQANLAGGAVPGDEARDGEERRRRRRGRRGGRRE
RDEEGVNVNTAADVAEAEGETAAAASTEAPVRAPEHTGRHEAQPQAVEAVPQLPVQEVKP
VEVVVAAVATSAAVVSELHASAETPALAVEKAAKTEAIVPADEAPAATQVEAAPVEPATF
ETQPVEAAARVAPVATTEAPAQVETVAAAPVAVEPAIEPVAAAPAAAPVEVAQPAAETHV
AAEPVVEPVVEPVVEPVVEPAAEAAAAEVTQAQPVVEPVREPAETQAAPVAAAAEPQPVR
TNGAAAGQSADALKSMLESAGLVWVNTDSDKLRAAQEAAAQTVKPARVARERKALPPVDT
TPMQQVETAKHQ
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaggaagaattgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgacatcgaaactgccgggcgtgaacaacgcaaaggcaat
atctacaaggggatcgtgacccgcatcgagccttcgctcgaagcctgcttcgtcaactac
ggtgaagaccgccacggttttctcccgttcaaggaagtcgctcgccagtacttccgcgaa
ggcgtcgacatgcgctccgcgcgcatccaggatgccctcaaggaaggccaggaactgatc
gtccaggttgagaaggaagaacgcggcaacaagggcgcggccctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaatccgcgtggcggcggtgtgtcgcgc
cggatcgaaggcgacgaccgccaggaactgcgcgaaaccatgtcgcagctgcaactgccc
gagggcatgagcatcatcgcgcgcacggcgggcatcggccgcagcgccgaagagttgcag
tgggacctgaactacctcatgcagttgtggcgcgccatcgaggccgcgtcgcaaagcggc
acgcaaggtcagccgatgctgatctatctcgaatcgagcctcgtgatccgcgcgattcgc
gactacttccagccggacatcggcgaaattctgatcgacaccacggaaatccatgaccag
gcgcgtgccttcatggacatcgtgatgccggacaatgtcaacaaggtgaagcggtatcac
gacgacgtgccgcttttctcgcgtttccagatcgagcaccagatcgagacggcctattcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacacggaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggccaca
cgcacgaacctcgaagccgccgacgaggtcgctcgtcagttgcgtctgcgcgatctgggt
ggcctgattgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
cagcgtctgaaggacgcgctcaagcacgaccgggcacgcgtccagatgggcaagatttcg
cgcttcggcctgatggaactgtcgcgtcagcgtctgcgcccggcgttgtcggaaggcagc
cacgtgacctgcccgcgctgtaacggcacgggccacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacacggcagccattcac
tgccaggtgcccgtagaggtcacggctttcctgctcaacgaaaagcgctcggaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtgctggtgccgaacaagcacctcgacacg
ccgcactacaagctcgagcgcctgcgccacgacgacgcccgcctcgacgatccgcgagcg
tcgtggaagatggccgaagaagcagctcgcgaactggagtccgaaacgggctacagcaag
cgcacggaagaagtgaagccgaagcaggaagcagccgtcaagggcatcacgcccgagaag
ccggcgccgagcgcacctgtgcgcacgccggctcctgctgccgctaccgtcgaagtgaag
cctgccacgggcggcttcatcggttggctgaagggcctgttcggcatgcagccagctgcc
ccggcgcccgcacccgcgcctgtcgagaaggcggcgaagccagtacgcggcgaacgcacc
gagcgcggcgagcgcacgggcgagcgcggcggcgaccgcaaccgcaaccgtcgcagcggc
ggcgcgggtggccgcgatgcggcaggccgcggcgaaggtacggcaacacaaggccgtcag
ggtcagccgtcgcagcgcggcgaacgtcaggaacgcgagccgcgtgaagcacgtgaacca
cgtggcggtcgcgagccgcgcgaaggccgcgaaacacgtgaaccgcgtgaagcacgcgag
gcacgtccggaacgtgtggaacgcggtcaggagcgcgccgaacgtgcggaagccgctgaa
gctcgtggcgagcgtcaggaacgtggcgagcgccgtgaacgtggtgaacgcgccgaacgc
ggcgaacgtcgcaagcaacagacggaagccgctgaagcactgagccagaacgaagcacaa
gccgatgtcgccgcgcaggcgcaagcgaatctggcgggcggcgctgtccccggcgacgaa
gcacgcgatggcgaagagcgtcgccgtcgccgtcgcggtcgccgtggcggccgtcgcgag
cgcgacgaggaaggcgtgaacgtgaacacggccgccgatgtcgcggaagcggaaggcgaa
acggctgcggccgcgtcgacggaagcgcccgtgcgcgctccggagcacacgggccgtcac
gaagcgcaaccgcaagccgttgaagctgtcccgcagctgccagtgcaggaagtgaagccg
gtcgaagtcgtcgtggcagccgtcgcgacgagcgcagccgtcgtcagcgaactgcatgca
tccgctgagacgccggccctcgccgtcgaaaaggcagcgaagacggaagccatcgtgccc
gcagacgaagcgcccgccgcgacgcaggtcgaagcggctcccgtcgagccggcaacattc
gagacgcagcctgtcgaagctgccgcgcgtgtcgcccctgtcgcaacaacggaagccccc
gcgcaggtcgaaaccgtcgcggctgcgcctgtcgcagttgaaccggccatcgaacccgtt
gcggccgcaccggcagcagcacctgtggaagtcgcgcaaccagcggccgaaacacatgtc
gcagcggaaccggtcgtcgagccggtcgtcgagccggtcgtcgagccggtcgtcgaacct
gccgctgaagccgccgctgcagaagtgacgcaagcgcaacctgttgtggaacccgttcgg
gaaccggctgaaacgcaagctgcgcccgtcgccgcagcggccgaaccgcaacctgttcgc
acgaacggcgcagcagccggccagtcggcggatgcgctcaagtcgatgctggaaagtgcc
ggccttgtctgggtcaacaccgactccgataagctgcgcgctgcccaggaagctgcggcg
cagaccgtgaagcccgcgcgcgttgcgcgcgagcgcaaggcgcttcctcccgtcgatacg
acgccgatgcagcaggtcgaaacggcgaagcatcagtaa
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