Paraburkholderia phymatum: Bphy_0949
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Entry
Bphy_0949 CDS
T00704
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bph
Paraburkholderia phymatum
Pathway
bph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphy_0949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bph03021
]
Bphy_0949
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_0949
Transcription machinery [BR:
bph03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Bphy_0949
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bphy_0949
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
ACC70138
UniProt:
B2JG56
LinkDB
All DBs
Position
1:complement(1059870..1061132)
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AA seq
420 aa
AA seq
DB search
MHLSELKTLHVSQLIEMANGLEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagactctgcacgtgtcccaattgatcgagatggccaatggt
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggagctgatgttcgccattctaaaa
aaacgcgccaaaacaggcgaaacgatcttcggtgacggcacgctcgaagtgctgccggac
ggcttcggtttcctgcgctcgccggaaacctcctatctcgccagcacggacgacatctac
atcagtccgtcgcagatccgccgcttcaacctgcatacgggcgacaccatcgaaggcgaa
gtccgcacgccgaaggacggcgagcgctactttgcgctggtgaaggtcgacaaggtcaac
ggccagccgcccgaggcctcgaagcacaagatcatgttcgagaacctgacgccgctgcac
ccgaacaaggtgctgctgctcgaacgtgaaatgcgtggcgaagaaaacgtcaccggccgc
atcatcgacatgatcgcgcccatcggcaaaggccagcgcggcctgctcgtcgcgtcgccg
aagtccggcaagacggtgatgcttcagcacatcgcgcatgccatcaagcagaaccatccg
gacgtgatcctgttcgtgctgctgatcgacgaacgtccggaagaagtgacggaaatgcaa
cgctcggtggcgggcgaagtgatcgcgtcgaccttcgacgaaccggccgcgcgtcacgtg
caggtcgccgaaatggtgatcgaaaaggcgaaacgcctcgtcgaaatgaagaacgacgtc
gtgattctgctcgactcgatcacgcgtctcgcgcgtgcgtacaacacggttgtgccggca
tcgggcaaggtgctgacgggcggcgtcgacgcgaacgcgctgcagcgtccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggtggttcgctgaccatcatcggcacggcgctg
atcgaaacgggcagccgcatggacgacgtgatctacgaagagttcaagggcacgggcaac
atggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtctatccgtcgatcaatctg
aacaagtccggcacgcgtcgcgaagaactgctgatcaagcccgagatcctgcaaaagatc
tgggtgctgcgcaagttcattcacgacatggacgaagtcgaagccatggaattcctgctc
gacaagatccgccagacgaagaacaacgcggagttcttcgacatgatgcgtcgcggcggc
taa
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