Paraburkholderia phymatum: Bphy_0997
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Entry
Bphy_0997 CDS
T00704
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bphy_0997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_0997
Enzymes [BR:
bph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bphy_0997
DNA repair and recombination proteins [BR:
bph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bphy_0997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACC70186
UniProt:
B2JGK1
LinkDB
All DBs
Position
1:complement(1117010..1120504)
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AA seq
1164 aa
AA seq
DB search
MPDIAASTQSASSTPVALVKAGQRFVFDGTHGSSDALLIARYHTAHKAQMPLLAVVCASA
VDAQRLSQELAFFAPDARIRLLPDWETLPYDSFSPHQDLVSERLATLHDLGEGRCDILLV
PATTALYRMPPASFMAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSL
IDLFPMGSPLPYRIDLFDDQVDSIRAFDPDSQRSLYPVKDVRLLPGREFPFDEAARTAFR
SRWREVFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFEETATLFHYLPEAAQLVFVGDLD
AAIRRFTADTKQRYGFLSHDRDRPILEPKRLFLSDDDFYTFAKPFARLSLPGNAGGGWAV
PLPNLAIDRHADDPVSALRAWLDTTPNRVLLAAESAGRRETIAQLLADNDLHPASADGYE
DWLTSDARFALSVAPLSNGFAIPSEGVAFLTETELYGPLARKTGRRRQEQASNVDSMVRD
LSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYQGDSKLYVPVSQLHVISRYS
GADPDSAPLHALGSGQWEKAKRKAAQQIRDTAAELLNLYARRAMREGHAFPLDPRDYVKF
AESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVA
LLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKTGKEVSASIQQINEGSVDIVIGTHKL
LSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDF
SVIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALV
PEARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGL
AQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIR
GTGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHTPAILP
ADYCGDVQERLSLYKRLANCEHNDSIDGIQEELIDRFGKMPPQAHALVETHRLRLAAKPL
GISKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDFTVRVAT
VKETLRALGTPSRGAADQRVASSR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacatcgccgcatccacgcagtccgcttcttcaacccctgtcgcgctggtcaaa
gccggccagcgtttcgtgttcgatggcacgcacggctcgtccgacgcgctgctgatcgcc
cgctatcacaccgcgcacaaggcgcagatgccgctgctcgccgtcgtctgcgcgagtgcc
gtcgatgcgcagcggctgtcgcaggaactcgcgttcttcgcgccggatgcgcgcatccgt
ctgctgcccgactgggaaacgctgccgtacgactcgttctcgccgcaccaggatctcgtg
tccgagcggctcgctaccctgcacgatctcggcgaaggccgttgcgatatcctgctggtc
ccggcgacgaccgcgctctaccggatgccgcccgcctcgttcatggccgcatacacgttt
tccttctcgcagggcgagcgtctcgacgaagcgaagctgaaggcacagctgacgctcgcc
ggctatgaacacgtgagccaggtcgtgcggccgggcgaatactgcgtacgcggctcgctg
atcgacctctttccgatgggctcgccgctgccgtaccggatcgacctgtttgacgatcag
gtggactccatccgcgcgttcgatcccgattcgcagcgcagcctgtatcccgtgaaggac
gtgcgcctgttgccgggccgtgagtttccgttcgacgaagccgcgcgcaccgcgtttcgc
agccgctggcgggaggtgttcgaaggcgatccgagccgcgcgtcgatctataaggacata
ggcaacggcgtgccgtcggcgggcatcgaatactatctgcccctcttcttcgaagagacc
gcgacgctctttcactatctgcccgaggctgcgcaactggtgttcgtcggcgatctggac
gccgccatccggcgcttcacggcggacaccaaacaacgctacggctttctgtcgcacgac
cgcgaccggccgattctcgaaccgaagcgcctgttcctgtcggacgacgatttctacacg
ttcgccaagccgttcgcgcgcctgtcgctgcccggcaacgcgggcggaggctgggccgtg
ccgctgcccaatctcgccatcgaccgccacgccgacgaccccgtctccgcgttgcgcgcg
tggctcgacacgacgccgaaccgcgtgctgttggcggcggaatcggcgggccgccgggaa
acgatcgcacaattgctggccgacaacgacctgcaccccgcgtccgccgacggctacgaa
gactggctgacgtccgacgcgcggttcgcgctcagcgtcgcgccgctctcaaacgggttt
gcgatcccctccgaaggcgtcgcgttcctgacggaaacggaactgtacggcccgctcgcg
cgcaagacgggacgacgccgccaggaacaggcgagcaacgtcgattcgatggtgcgcgat
ctgtcggagctgaaggtcggcgaccccgtcgtgcattcgcagcacggcatcggccgctac
atgggcctcgtgacgatggacctcggtgaaggcgaaaccgagttcctgcacctcgaatac
cagggcgacagcaagctctacgtgcccgtgtcgcagttgcacgtcatttcgcgctacagc
ggcgccgatcccgacagtgcgccgctgcacgcactcggctcgggacagtgggaaaaggcg
aagcgcaaggctgctcagcagatccgcgatacggcggccgaactcctgaacctgtacgct
cgccgtgccatgcgcgaaggccatgccttcccgcttgatccgcgcgactacgtgaaattc
gcggaaagtttcggcttcgaggaaacgcctgaccaggcggccgcgatcgccgccgtgatc
ggcgacatgacaagcggcaagccgatggatcgcctcgtgtgcggcgacgtcggtttcggc
aagacggaagtcgcgttgcgcgcggccttcatcgcggtgatgggcggcaagcaggtcgcg
ctgctctcgcccaccacgctgctcgccgaacagcacacgcagaccttcaccgaccgcttc
tccgactggccggtgcgcatcgccgaattgtcgcgcttcaagacgggcaaggaagtcagc
gcgtcgatccagcagatcaacgaaggcagcgtcgatatcgtgatcggcacgcacaagctg
ctctcgtcggatgtgcagttcaagcggctcgggctcgtgatcatcgacgaggagcaccgt
ttcggcgtgcgccagaaggaagcgctcaaagcgctgcgtgccgaagtcgatgtgctgacg
ctcaccgcgacgccaattccgcgtacgctcggcatggcgctcgaaggtctgcgcgacttc
tccgtgatcgccacagcgccgcaaaagcgcctcgcgatcaagaccttcgtgcggcgcgag
gaagacggcgtgatccgcgaagccatgctgcgcgaactgaagcgcggcggccaggtgtac
ttcctgcacaacgaggtcgaaaccatcgaaaaccgccgccagatgctcgaagcgctcgtg
cccgaagcgcgcatcgcggtggcgcacggccagatgcacgagcgcgaactcgaacgcgtg
atgcgcgatttcgtggcgcaacgcgcgaacgtgctgctgtgtaccacgatcatcgaaacg
ggtatcgacgtgccgagcgcgaacacgatcctgattcatcgcgccgacaaattcggtctt
gcgcaacttcaccagttgcgcgggcgtgtcgggcgctcgcatcaccaggcgtactcgtat
ctgctcgtgcacgatccgcaaggtctcacgaagcaggcgcaacgacgtctcgaagcgatc
cagcagatggaagagctcggtgccggcttctatctggcgatgcacgacctcgaaatccgc
ggcacgggggaagtgctcggcgacaaacagtcgggcgagattcacgagatcggtttccag
ctctataccgacatgctgaacgacgcggtaaaggcgctgaaaaacggcaaggagccggac
ctcacggcgccactggcggccacgacggagatcaacctgcatacgcccgcgattcttccc
gccgactattgcggcgacgtgcaggagcgtctgtcgctgtacaagcgtctcgcgaactgc
gagcacaacgattcgatcgacggcattcaggaagaattgatcgaccgtttcggcaagatg
ccgccgcaagcgcatgcgctcgtcgaaacacaccgcttgcgcctggccgccaagccgctc
ggcatttcgaagatcgacgcgggcgaggctgtgatcggcctgcagttcatcccgaatccg
cccatcgacgcgatgcggatcatcgagatggttcagaagcataagcacatcaagctcgcg
ggtcaggacaagctgcgcatcgaaacgcgcagtcccgatttcacggtgcgcgtcgcgacc
gtgaaggagacgctgcgcgcgctcggcacaccgtccaggggcgccgcggatcagcgcgtg
gcgtcgtcgcgctag
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