Paraburkholderia phymatum: Bphy_1448
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Entry
Bphy_1448 CDS
T00704
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03410
Base excision repair
bph03430
Mismatch repair
bph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bphy_1448
03430 Mismatch repair
Bphy_1448
03440 Homologous recombination
Bphy_1448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_1448
DNA repair and recombination proteins [BR:
bph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Bphy_1448
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Bphy_1448
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bphy_1448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ACC70630
UniProt:
B2JIX9
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All DBs
Position
1:1629302..1631035
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AA seq
577 aa
AA seq
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MNRFPPDPRMTRIVTRPCSPADAEALIRHGLHPVLARLYASRGVCLPDEVETGLARLTPP
ASLKGCDTAAALLADAIEGKRRMLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFE
YGYGLTPEIVGLAAQRPGGKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELP
AARAIVNPNQPGCSFPSKCMAGVGVMFYVLLALRAELRTRGAFGETRPEPRLDGLLDLVA
LGTVADVVKLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARSASGFDLGFALGPR
LNAAGRLSDMSLGIDCLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALDDLSGVDPA
GATTITLFNPTWHQGVIGIVAGRLKEKFHRPSFTFALADERGETVKGSGRSIPGFHLRDA
LDLVSKREPGLIARFGGHAMAAGLTIATADLQRFTAAFEQIGREWLTQDVLARTLETDGE
LEDAYFTPQFVEMLDAAVWGQGFPAPVFSGEFDVMSQALVKDKHLKLQLMRGRQRFNAIW
FNHTESLPARTTVAYRLSADSWNGVARVQLIVEHAVS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgttttccgcccgatccgcgcatgacccgaatcgttacccgcccctgctctccc
gccgacgccgaagcgttgatccgccacggcctgcatcccgtgctcgcgcgtctgtacgcg
tcgcgcggcgtctgcctgcccgatgaggtcgaaaccggcctcgcgcgcctcacgccgccc
gcgtcgctcaaaggctgcgacacggccgccgcgctgctcgccgatgcgatcgaaggcaaa
cgccgcatgctggtcgtcgccgactacgactgcgacggcgcgaccgcctgcgccgtcgcc
gtacgcggactgcggatgttcggcgcgcagatcgactacctcgtgccgaatcgcttcgag
tacggctacggtctgacgcctgaaatcgtcgggcttgccgcgcagcgtcccggcggcaag
cccgacttgctgatcaccgtcgacaacggcattgcaagcgtcgacggagtcgaggcggcg
aacgcgctcggcatcgatgtgctcgtcaccgaccatcacctgcccggcgacgaactaccc
gccgcgcgcgcgatcgtcaatccgaaccagccgggatgctcgtttccgagcaaatgcatg
gcgggcgtcggcgtgatgttctacgtgctgctcgcgttgcgcgccgaactgcgcacgcgc
ggcgcgttcggcgaaacgcgtccggagccgcgcctcgacggcctgctcgacctcgtcgcg
cttggcacggtggccgacgtcgtcaagctcgacggcaacaaccgggtgctggttgcgcag
ggtttgcagcgcatccgcaatgggcgcatgcaaccgggcatcgccgctctttttcgcgca
gcggggcgcgatgcgcgcagcgcgtcgggcttcgatctgggcttcgcgctcgggccgcgg
ttgaacgcggcgggacgtttgtcggacatgtcgctgggcatcgactgcctgacgacggac
gacgtcggacgcgcgtgggagctcgcgcaacagctcgacgcgatgaaccgcgagcggcgc
gaaatcgaagcgggcatgcagcagcaggcgctcgatgacttgtcgggcgtcgatcccgcc
ggcgcgacgacgatcacgctgttcaatccgacgtggcatcagggcgtgatcggcatcgtc
gccgggcgcctgaaggaaaaattccatcgtccgtcattcacgttcgcgctggccgacgag
cgtggcgagacggtcaagggctcggggcgctcgattcccggcttccacctgcgcgacgcg
cttgatctggtgtcgaagcgcgagccgggcctgatcgccaggttcggcggccacgcgatg
gcggcgggcctgaccatcgcgaccgccgatctgcagcgtttcacggcggccttcgagcag
atcggccgagagtggctcacgcaggacgtgctggcacgcacgttggagacggacggcgaa
ctcgaagacgcgtatttcacaccgcaattcgtcgagatgctggacgcggctgtctgggga
cagggctttcccgcgcccgttttttcgggcgaattcgatgtgatgtcgcaagcgctggtg
aaggacaaacacctcaagctgcaactgatgcgcgggcggcagcgcttcaatgcaatctgg
ttcaatcatacggaatcgctgccggcacggacgacggttgcgtaccgactgtctgccgat
tcctggaatggcgtggcgcgggtgcagctcatcgttgaacacgccgtgtcgtag
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