Paraburkholderia phymatum: Bphy_1488
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Entry
Bphy_1488 CDS
T00704
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bph
Paraburkholderia phymatum
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_1488
Enzymes [BR:
bph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bphy_1488
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Bphy_1488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
T2SSE
nSTAND3
AAA_19
AAA_30
NACHT
AAA_22
AAA_23
AAA_16
PhoH
Motif
Other DBs
NCBI-ProteinID:
ACC70670
UniProt:
B2JJC7
LinkDB
All DBs
Position
1:complement(1680399..1684787)
Genome browser
AA seq
1462 aa
AA seq
DB search
MSNVPKSSAGADTKNAPSDNAKDAANPVPRGHRHEKHEARGNAPRSDVSVNAANAPLTGA
STHGEANTRESAGAAKSGAREAQNRAENRAQNARQDRQGKRSGPNPAGGTARQQTRPEDR
ARAGNQSGADKPRNAPREPQKPARVVEPNPIPPITFPEALPVSGRREEIARAIEGHQVVI
VSGETGSGKTTQLPKICLALGRGLGAGGGGLIGHTQPRRIAASATGRRIAEELGTPFGEV
VGYKVRFTDNLSPGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYL
KEILPKRPDLKLIVTSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPVADDSPA
VKAAEGNSGREHRPDRPKTQRETDRDLMDAIVEAADELCREGPGDVLVFLPGEREIRDAA
EALRKHHPPHTEILPLFARLSAAEQERVFRPSNARRIVLATNVAETSLTVPGIRYVIDTG
LARVKRYSYRNKVEQLQVEAISQAAANQRAGRCGRVADGICIRLYEEADFQARVRFTDPE
ILRSSLAAVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRE
LARLPLDPRVGRMILAARDQLALREVLIIASALSVQDPRDRPIDAQEQADQAHRKFADER
SEFLQWLKIWTWFEEAVAHKKSNRQLTDACRQNFLSHLRLREWRDVHSQLLTVVREHGWR
LNESEATFEQIHLALLTGLLGNIGLKADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAA
ELIETSRLYARCIAKIEPEWVERVGAHLLKKSLSEPHWEKRAAQVTAFERAMLYGLPVYH
RRRVSFGKQDPARARELFIRGALVEGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVD
DELIYAFYDQAIPNGIHTGAAFERWYRDEVKKSGQQEDKLRLLYLSRDDLMRHEAAGVTT
DLFPKRMTMAGVDMALTYHFEPGSPRDGVTLAVPLYALNQVDTRRVEWLVPGMLREKTQL
LLKSLPQKLRRHVVPLPEYAAGFVERHSGPPFGAGGLLDTVIADVREQTQVATKQSDYKL
ETLAPHLFMNFKVIDEHGRQLAMGRNLAQLRAELGGQAQQQFQKIATSAAGAALANVGSG
GDASARAAASGAAAGAGRGASAAPRTPTAGEAAAAPATALYENLTTWNFGKLPELLEIRR
GGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLREPIKYLEKNLPGLR
EMAMQFMPRGTQEELRDQLIDTALDRACLQEPLPDDDASFHARKDEGRSRLTLLAQEIAR
LVGQILGEYSAVLKKLAQAKPFAAAYADMHAQLDALIGKRFVVDTPYAQLSHFPRYLKGI
ALRIDKLKADPARDARQFAELQPLAQHYQRALGQRGGVPDVRLAEFRWLLEELRVSLFAQ
ELRTPMPVSVKRLYKVWESMQR
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagctccgctggagccgatacgaaaaacgctccgtccgataac
gcgaaagacgccgcgaaccccgtgccgcgcggccatcggcacgagaaacacgaggcgcgc
ggcaacgcacctcgcagtgacgtttccgtgaatgctgcgaatgcgcccctgacgggcgct
tccacgcacggcgaagcaaacacacgcgaaagcgcgggcgcggcgaagagtggcgcgcgg
gaggcgcagaatcgcgcggagaaccgcgcgcagaacgcgcggcaggaccggcagggcaag
cgtagcggaccgaatccggcaggcggcacggcgcggcagcagacgcgtccggaagaccgt
gcacgcgcgggtaatcagtccggcgccgacaagccgcgcaatgcgccgcgcgagccgcag
aagcccgctcgcgtcgtcgaacccaaccccattccgccaatcacgttccccgaagcgttg
ccggtgtcgggccgccgcgaggaaatcgcgcgagcgattgaaggacatcaggtcgtgatc
gtcagcggcgagacgggctcgggcaagacgacacagttgccgaaaatctgtctcgcgctc
ggacgcggactcggcgcggggggcggcgggctgatcggtcatacgcagccgcgccgcatc
gcggcctcggcgacgggccggcgcatcgccgaggaactcggcacgccgttcggcgaagtg
gtcggctacaaggtgcgcttcaccgacaatctctcgcccggcgcgtccgtcaagctgatg
acggacggcattttgctcgcggaaacgcagaccgatccgctgctgaaggcgtacgacacg
ctgatcatcgacgaagcgcacgagcgcagcctgaacatcgattttctgctcggctatctg
aaagagattctgccgaagcgtcccgatctgaagctgattgtgacctcggcgaccatcgac
gccgatcgtttcgcgcgtcatttcggcagcgaagaaaagcccgcgcccgtgatcgaagtg
agcgggcggctgtatcccgtcgaggtgcgctatcggcccgtcgccgacgattcgccggca
gtgaaggcggctgagggcaactccggccgcgaacatcggccggatcgtccgaaaacgcag
cgcgagaccgatcgcgacctgatggacgcgatcgtcgaagccgccgacgaactgtgccgc
gaaggtcccggcgacgtgctcgtgtttctgcccggcgagcgcgaaattcgcgacgcggcg
gaagcgctgcgtaagcaccatccaccgcacacggaaatcctgccgctgttcgcacggttg
tcggcggccgagcaggagcgcgtgttccggccatcgaacgcgcggcgcatcgtgctcgcg
accaacgtcgcggaaacctcgctgacagtgccgggcatccgctacgtgatcgacacgggc
ctcgcgcgcgtgaagcgctactcgtatcgcaacaaggtcgagcagttgcaggtcgaggcg
atttcgcaagcggccgcgaaccagcgcgcggggcgctgcggccgcgttgccgacggcatc
tgcatccgtctgtacgaagaagccgatttccaggcgcgtgtgcgcttcacggatccggaa
attctgcgttcgtcactggcggccgtcattttgcggatgaagtcgctgcatctgacggcg
atcgaaacgtttccattcatcgaaccgccgcccggccgcgcgatcgccgacggctatcag
ttgctcaacgagctcggtgccgtcgacgacgacaacgcgctcacgccgctcggccgtgaa
ctggcacgtctgccgctcgatccacgcgtcgggcggatgattctcgccgcgcgtgaccag
ctcgcgctgcgcgaggtactgatcatcgcgagcgcgctgtccgtgcaggacccgcgcgac
cgcccgatcgacgcacaggagcaagccgatcaggcacaccgcaagttcgccgacgagcgc
tccgagtttctgcaatggctgaaaatctggacgtggttcgaagaggcggttgcgcacaag
aaatcgaacaggcagctgaccgacgcttgccggcagaatttcctctcgcatctgcgtctg
cgcgaatggcgcgacgtgcattcgcaactgctcaccgtggtgcgcgagcacggctggcgt
ctgaacgagagcgaagcaaccttcgagcagatccatctcgcgctgctgacgggcctcctt
ggcaacatcggtctcaaagccgacgacgagccgtactatctcggcgcgcgcgggatcaag
ttctatttgtggccgggttcggcgctcgtgaagaaagcgggcaaatgggtgatggcggcc
gaacttatcgaaacgagccgcctgtacgcgcgctgtatcgcgaagatcgagccggaatgg
gtcgagcgcgtcggcgcgcatctgttgaagaagtcgctgtccgaaccgcactgggaaaag
cgcgccgcgcaggtgacggcattcgagcgcgcgatgctatatggtctgcctgtctatcac
cggcggcgcgtcagcttcggcaagcaggatcccgcgcgcgcgcgggaattgttcatccgt
ggcgcgctcgtggaaggggagttcgacacgaagctcgcgttcttcgcgcacaaccgcaag
ctgctcgccgatatcgaacagctcgaacacaagtcgcgccgtcaggacgtgctggtcgac
gacgaactgatctacgcgttctacgatcaggcaattccgaacggcatccatacgggcgcc
gcgttcgagcgctggtatcgcgacgaagtgaagaagagcgggcagcaggaagacaagctg
cggctgctgtacctgtcgcgcgacgatctgatgcgccatgaggctgctggcgtcacgacg
gatctgttcccaaagcggatgacgatggcgggcgtcgacatggcgttgacttatcacttc
gagccgggctcgccgcgcgatggcgtgacgcttgccgtgccgctgtatgcgctgaatcaa
gtggatacgcggcgcgtcgagtggctcgtgcccggaatgctcagggaaaagacgcaattg
ctgctcaagtcgctgccgcaaaagctgcgccgccacgtcgtgccgttgccggaatatgcg
gcgggattcgtcgaacggcacagcgggccgccctttggcgctggcggcctgctcgatacg
gtgatcgccgacgtgcgggagcagacgcaagtcgcgacgaagcagtcggactacaagctc
gagacgctcgcgccgcatctgttcatgaacttcaaggtcatcgacgagcatggacggcag
ctcgcgatgggccgcaacctcgcgcaattgcgcgcggagctgggcggtcaggcgcagcag
cagttccagaagatcgcgacgagcgcggcgggcgcagcgctcgcgaatgtgggttccggc
ggcgacgcgtctgcgcgtgctgctgcgtccggcgccgccgcaggcgctggacgtggcgcg
tccgccgcgcctcgcacgccgacggcaggcgaagctgccgccgcgcccgccaccgcgctc
tacgaaaacctgacgacgtggaacttcggcaagctgcccgagttgctcgaaatccggcgg
ggcgggcagacgctgttcggttatcccgcgctcgtcgatcgcggcacgcattgtgacgtc
gaagtgttcgattcgcccgacgaggcggcgcggattcatcgcgcgggcttgcggcggctt
ttcgcactgcagttacgagagccgatcaagtacctcgaaaagaatctgccgggactgcgc
gaaatggcgatgcagttcatgccgcgcggcacgcaggaggaattgcgcgatcagcttatc
gatacggccctcgaccgcgcgtgcctgcaagaaccgctgcctgacgacgacgccagcttt
cacgcccgcaaggacgaaggccgaagcaggctcacgttactggcgcaagagattgcccgg
ctcgtcgggcagattcttggcgagtattcggccgtcctcaaaaagctcgcgcaggccaag
ccgttcgccgccgcgtacgccgacatgcacgctcagctcgatgcgctgatcggcaaacgc
ttcgtcgtcgatacgccgtatgcgcagctgtcgcatttcccgcgctatctgaagggcatt
gcactgcgcatcgacaagctgaaagcggacccggcacgcgatgctcgccagttcgccgaa
ttgcagccgctcgcgcagcattaccagcgtgcgctcgggcagcgcggcggcgtgccggat
gtgcggctcgccgagttccgctggctgctggaggaactgcgcgtgtcgttgttcgcgcag
gagctgcgcacgccgatgcccgtctctgtcaagcggctctataaggtctgggagtcgatg
cagcgctga
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integrated database retrieval system
