Paraburkholderia phymatum: Bphy_1549
Help
Entry
Bphy_1549 CDS
T00704
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bph
Paraburkholderia phymatum
Pathway
bph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bphy_1549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_1549
DNA repair and recombination proteins [BR:
bph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bphy_1549
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bphy_1549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
AAA_21
AAA_29
AAA_16
nSTAND1
AAA_23
RsgA_GTPase
AAA_25
AAA_22
AAA_33
Viral_helicase1
NACHT
UvrA_DNA-bind
AAA_18
ATPase
DnaJ_CXXCXGXG
SbcC_Walker_B
DUF4350
RNA12
Motif
Other DBs
NCBI-ProteinID:
ACC70731
UniProt:
B2JJI8
LinkDB
All DBs
Position
1:complement(1751075..1757068)
Genome browser
AA seq
1997 aa
AA seq
DB search
MRTSPHRQAWPLSGRPHAPANSFRRTGKLSSNGTIRIRGARQHNLKNVDLDLRTGEMTVV
TGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQFLDRMDRPQVDRVDGVPPAIAIDQTN
PVRSSRSTVGTMTELNDHLKLLYARAAELFDRKNAQAVRHDTPETIYAELDARTATDDPR
IVLTFPVELPDTTSEAEVEQWLSASGYTRVQAQREIASPTGMRKVLDVVADRFRLHQVEK
SRVVEAIEASLKRGGGRVNVYVLAQAQDGEEAEPQIWRFSTGLHNPDSDLRYADPQPALF
SFNSAYGACDTCRGFGRVIGVDLGLVIPDERKTLRGGAIKPMQTPAWKECQDDLMRYAAK
ANIRRDTRWSELTEEERDWVINGSPDWDGEWQKQWYGVKRFFGYLESKAYKMHIRVLLSK
YRSYTPCETCGGARLKTESLLWRLGSRKNADAVLEPARRFMPRGVDWNRTQLEALPGLTV
HDLMLLPIERIRRFFDEIALPSALLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTL
SGGEVQRINLTTALGTSLTKTLFVLDEPSIGLHPRDLNRIVEAMQRLRDAGNTLVVVEHD
PSVMLAADRLIDMGPGPGERGGTIIYDGTPGAIRSAGTLTGEYLGGRKHVADAAHWARRR
VDASTPRITLEGARQHNLRDVTVEIPLQRLVCVTGVSGSGKSTLIQDVLYPALSRQLGKA
TEAPGAHRSLSGVELISDAIFVDQSPIGKTTRSNPASYVGAFDEIRKLFAKAPLALQRGY
GAGVFSFNSGDGRCPTCGGSGFEHIEMQFLSDVYLRCPDCDGSRYRPEVLEVKIERDERV
LSIADVLELTVHEAVGVFAGDGEVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAG
FLAETAQARTARGGAKQTPARLFMFDEPTTGLHFDDIAKLMQAFGKLLAGGHSLIVIEHN
LDVIRAADWLIDLGPEGGDAGGLVVCAGTPDEVKQCRDSHTGEALVIYDGAMGQAIEPTE
AAEKAEAAAHGMPLQTALNAARARRAVEGEDVVRIVNAREHNLKALDVDIPHGKFNVITG
VSGSGKSTLAFDILFHEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSR
GGRKSTVATTSEVWHFLRLLYVKLGVQHCIHDGAPVTSQSVESILAQLMRDHKGQHIGLL
APLVVNRKGVYTDLAKWAKARGNTHLRVDGEFVPVDPWPKLDRFREHTIELPVGDIVVSA
DMEAELRRLLDETLEAGKGVMHLLAPLDGLEHAMTRNGPTAHVGEVKVLSVKRACPVCGV
SYAELDPRMFSYNSKHGWCTTCVGTGLALTREQRAAYDDTVLVEDNRGREQTLPSDEQEP
EGVGEEPCPDCHGTRLNPSARAVTFDETSIVDVAQWTVSDTRRWIDGLELVGRDAEIARD
VISEIGSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIG
LHPRDNQILLNALRKLGDKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGRVG
DLSARSDSLTGQFLAKPILHPLQERRPVSLATKRAPAVPENWLTVHGATLHNLRDVTVGI
PLGRLVAVTGVSGSGKSTLARDVLMTNLLDAVGRSVLSSPAARRARKAAQADDAPAANRR
SSVLARSAPRPSLNVAYAWQGCESISGFESIDRVLEVDQTPIGKTPRSCPATYIGVWDTI
RRLFADTLEARARGYTASRFSFNTGDGRCPACEGQGVRTIGMSFLPDVKVPCDVCHGQRF
NPETLAVTWRGKNIGDVLTMEIDEAVDFFASMSNIAHPLQLMKDVGLGYLTLGQPSPTLS
GGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVLDEPTVGLHMADVAKLIRVLHRLANAG
HSVVVIEHDLDVIAEADWIIDLGPEGGVGGGTIVASTHPEGLVRVAASHTGRALEPVLAR
AAGESDETVAGERVSAG
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaacctcgccgcatcggcaggcgtggccgctttccggccgccctcatgccccggcc
aactcattcagacggacaggcaaattgtcatctaacggaacgatccgaattcgtggcgca
cgccagcacaacctgaaaaacgtcgacctcgaccttcgcacgggcgaaatgacggtggtt
acagggccgtcgggctcgggtaaatcgagcctcgtgttcgacacgttgtatgcagagggg
cagcggcgctacgtcgaaactttcagcgcgtacgcgcggcagtttctagaccggatggac
cggccgcaggtcgaccgcgtcgacggcgtgccccccgccatcgccatcgaccagaccaac
cctgtgcgcagttcgcgttctaccgtcggcacgatgacggagctgaacgaccatctgaag
ctcctctacgcgcgtgctgccgaactgttcgaccgcaagaatgcgcaggccgtccggcac
gacacgcccgaaaccatttacgcggaactggatgcccgcacggccaccgacgacccgcgt
atcgttttgacgttcccggtcgaactgccagacacgacgagcgaagcggaagtcgagcaa
tggctctccgcgagtggctatacgcgcgtccaggcgcagcgcgaaatcgcgtcgccgaca
ggcatgcgcaaggtgctcgatgtcgtcgccgaccggtttcggctgcatcaggtcgaaaag
tcgcgcgtcgtcgaggcaatcgaagcgtcgctcaagcgcggcggcggccgcgtcaacgtc
tacgtgctggcgcaggcgcaagatggcgaagaggccgagccgcagatctggcgtttctcc
acggggctgcacaatcccgacagcgacttgcgctatgccgatccgcagcctgcgttgttc
tccttcaattcggcctacggcgcgtgtgacacgtgccggggcttcgggcgcgtgatcggc
gtcgatctcggtctcgtgattcccgatgagcgcaagacgcttcgcggcggcgcgatcaag
cccatgcaaacgcctgcatggaaggaatgccaggacgacctgatgcgctatgcggcgaag
gccaacatccgccgtgacacgcgctggtcagaactcacggaagaggagcgcgactgggtc
atcaacggctcgccggactgggacggtgagtggcagaaacagtggtacggcgtgaagcgt
ttcttcggctatcttgagtcgaaagcatacaagatgcacatccgtgtgctgctgtcgaag
taccgcagctacacgccctgtgaaacatgcggcggtgcgcggctgaaaacagaatcgctg
ctgtggcgtctgggctcgagaaagaacgcggacgccgtgctcgaaccggcgcggcgcttc
atgccgcgcggggtggactggaaccgtacgcagctcgaagcattgccgggcctgacggtg
cacgatctgatgctgctgcccatcgagcgcatccggcgcttcttcgacgagatcgcactg
cccagcgcgctgctggacgacgcgctgaagctgctgctcgccgaagtacgcacacgcctc
aagtatctgtgtgacgtgggcctcggttacctgacgctcgaccgtcagagccgcacgctg
tcaggcggcgaggtccagcgtatcaacctgacgacggcgcttggcacgtcgctgaccaag
acgctgttcgtgctcgatgaaccgagcatcggtctgcatccgcgtgatctgaaccggatc
gtcgaggcgatgcagcgtctgcgtgacgcgggcaatacgctcgtcgtggtcgaacacgat
ccgtccgtgatgctcgccgccgatcgcctgatcgacatggggcccggtccgggcgaacgc
ggtggcacaatcatttacgacggcacacccggggcaatccgttcggcggggacgctgacg
ggcgaatatctgggcgggcgcaagcatgtcgccgacgcggcgcactgggcgcgtcggcgc
gtggacgccagcacaccgcgcatcacgctcgaaggcgcacgccagcacaacctgcgcgac
gtgacggtggagattccgttgcaacggctcgtctgcgtgacgggggtgtcgggttccggc
aagtcgacgctgatccaggacgtgctgtatcccgcgctgtcgcggcagctcggcaaggcg
acggaagcgccgggcgcgcaccgcagtctgtcgggcgtcgagctgatcagcgacgccatc
ttcgtcgaccagtccccgatcggcaagaccactcgctcgaacccggcaagctacgtcggg
gctttcgacgagattcgcaaactgttcgcgaaggcgccgctcgcgttgcaacgtggctat
ggcgcgggcgtgttcagcttcaactcgggcgacggacggtgcccgacgtgcggcggctcg
ggcttcgaacatatcgaaatgcagttcctgagcgacgtctatctgcgttgcccggattgc
gacggcagccgctaccggcccgaagtactcgaggtgaagatcgagcgcgatgagcgcgtg
ctgagcattgcagatgtcctcgaactgaccgtgcatgaggcggtcggcgtgttcgcgggc
gacggcgaagtgctgcgcgtgctgcagcctatcgtcgatgtcggtctcgaatacgtgaag
ctgggccaaccggtgccgacactgtcgggcggcgaagcgcagcgtctcaaactcgcgggt
tttcttgcggaaactgcgcaggcgcgcacggcacgcggtggcgcgaagcagacgccagcg
cgtctgttcatgttcgacgagccgaccacgggtcttcacttcgacgatattgccaagctg
atgcaggcttttggcaagctgctcgcgggcggtcattcgttgatcgtgatcgagcacaat
ctcgacgtgatccgcgcggccgactggctgatcgatctcggtcccgaaggcggcgacgca
ggcggtctggtggtatgcgcgggtacgccagatgaggtcaagcagtgccgcgattcccac
acgggtgaggcactcgtgatatacgacggcgcgatgggtcaggccatcgagccaactgaa
gccgccgagaaggcagaagctgctgcacacggcatgccgcttcagacggcgctgaacgct
gcacgcgcaaggcgtgccgtggaaggcgaggacgtcgtgcgcatcgtgaacgcgcgcgag
cacaacctgaaagcgctggacgtcgacattccgcacggcaagttcaacgtcatcacgggc
gtttcgggttcaggcaagtcgacgctcgcgttcgacatcctgttccatgaaggacaacgc
cggtacctcgagtcgctgaatgcctatgcacgctcgatcgtgcaacccgcgggccgtccc
gaagtcgatgccgtgtatggcatcccgcctaccgtcgcgatcgaacagcgcttgtcgcgc
ggcggacgcaagagtacggtggcgacgacatcggaggtgtggcacttcctgcgtctcctc
tatgtgaagctcggcgtccaacactgcattcatgacggcgcgcccgtgacatcgcagagc
gtcgagtcgatcctcgcgcagctcatgcgcgaccacaaaggccagcacatcggcttgctc
gcgccgctggtcgtgaatcgcaagggcgtctataccgacctcgcgaaatgggcgaaggcg
cgtggcaatacacatctgcgcgtcgacggcgaattcgtccccgtcgatccatggccgaag
ctcgatcgcttccgtgagcatacgatcgagttgccagtcggcgacatcgtagtatcggcg
gacatggaagccgaactgcgtcgactgctcgacgaaacgctcgaagcgggtaagggcgtg
atgcatctgctcgcgccgctcgacggcctcgaacacgcaatgacgcgtaatggtcccacc
gcccatgtcggcgaagtgaaggtgttgtcggtgaagcgcgcgtgccctgtgtgcggcgtc
agttacgcggagctcgacccgcgcatgttctcgtacaacagcaaacacggctggtgcacg
acctgtgtcggtacgggtctcgcgctgacgcgcgaacagcgggctgcgtacgacgacacc
gtgctcgtcgaggacaatcgcggccgcgagcagaccttgccgtcggatgaacaggagccg
gaaggtgtgggcgaagagccatgtccggattgccacggcacgcgcctgaatccgtccgct
cgcgccgtgacgttcgacgaaacctcgatcgtggacgtcgcgcaatggacggtgtcggac
acgcggcgctggatcgacgggctcgaactcgttggtcgcgacgcggaaattgcgcgcgac
gtgatcagcgaaatcggcagccgtttgcagttcctcgaagaagtcggcctcggttatctg
agcctcgatcgtgctgcgccgagcctgtctggcggtgaagcgcaacgcattcgcctcgcc
gcgcagcttggcagcaacctgcagggcgtgtgttatgtgctcgacgagccgaccatcggt
ctgcatccgcgcgataaccagattcttctgaatgcgctgcgcaaactcggcgacaagggc
aacacactggtcgttgtcgagcacgatgaagacacgatccgccgcgcggatcacatcatc
gacatcggtccgggggctggcaagcgcggcggtacgctggtcgcgcaagggcgtgtcggc
gatctgtctgcgcggtccgattctctgacgggacaattcctcgcgaagccgatcctgcac
ccgttgcaggagcggcgtcccgtttctcttgcaacgaagcgtgcgccggccgtccctgaa
aactggctgaccgtgcacggcgcgacgctgcacaacttgcgcgacgtgacggtcggcatt
cccctcggacgtctcgtcgccgtgacgggtgtgagcggatccggtaaatcgacgctcgcg
cgcgacgtgctgatgacgaatctgctcgatgccgtcggccggtccgtgttgtcgtcgcct
gctgcgcgccgtgcacgcaaggccgcgcaagccgacgacgcccctgccgcgaaccgtcgc
tcgagcgtgctcgcacgcagtgcgccacggccgtcgctgaacgtcgcgtatgcatggcaa
ggctgcgaatcgatcagcggcttcgagtcgatcgaccgtgtgctcgaggtcgaccagacg
ccgatcggcaagacgccgcgctcgtgtccggccacgtatatcggtgtatgggacaccatc
agacgtctcttcgccgacacgctcgaagcgcgagcgcgcggctacacggcatcgcgcttc
tcgttcaacacgggcgacggacgctgtcccgcatgtgaagggcaaggcgtgcgcacgatc
ggcatgagtttcctgcctgatgtaaaggtgccgtgcgatgtctgtcacggtcagcgcttc
aatccagaaacgcttgccgtgacgtggcgcggcaagaacatcggcgacgtgctaaccatg
gaaatcgacgaagccgtcgacttcttcgcgtcgatgtcgaatatcgcgcatccgttgcaa
ctgatgaaggatgtggggctcggctatctgaccctcggtcagccgtcgccgacgctgtcg
ggcggcgaggcgcagcgcatcaagctggtgactgaactgagcaaggtgcgcgacgacatc
acacggcgcggtcaaaaggcgccgcacacgctgtatgtactcgacgaaccgaccgtcggc
ctgcatatggccgacgtcgcgaagctgattcgcgtgctgcatcggctcgcgaatgctggg
catagcgtcgtcgtgattgaacacgacctcgatgtgatcgcggaagcggactggatcatc
gatctcggaccggagggtggtgtaggcggtgggacgatcgttgcgtcgactcatccggaa
ggcttggtgcgcgtcgcggcgagccatacggggcgcgcgctcgaacccgtgctcgcgcgt
gccgcgggcgagtccgatgagaccgtggcgggcgagcgggtcagcgcgggttga
DBGET
integrated database retrieval system
