Paraburkholderia phymatum: Bphy_2013
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Entry
Bphy_2013 CDS
T00704
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphy_2013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_2013
03016 Transfer RNA biogenesis [BR:
bph03016
]
Bphy_2013
Enzymes [BR:
bph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Bphy_2013
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bphy_2013
Transfer RNA biogenesis [BR:
bph03016
]
Prokaryotic type
tRNA degradation factors
Bphy_2013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
UPF0181
Motif
Other DBs
NCBI-ProteinID:
ACC71192
UniProt:
B2JDN2
LinkDB
All DBs
Position
1:complement(2263257..2265395)
Genome browser
AA seq
712 aa
AA seq
DB search
MSLFNKVVKEFKWGQHTVRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFP
LTVDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVM
SINPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLDLV
VAGTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKAEWEWQAAPK
NEALISRVNEIAYNELLSAYQTRDKQARSTKLKEVYAATQAKLEEEAAAAGTVAADKASV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA
CLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVSGVNTELSAYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIENITAEVEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE
IANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAQTEPTPQQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtttaacaaggtcgtcaaagagttcaagtggggccagcatacggttcgcatg
gaaacgggcgaaatcgcccgccaggcgagcggtgccgtgctcgtcgacgtcgaagacacg
gtggtgctggccaccgtcgtcggtgcgaagacggccaagccgggtcaggacttctttccg
ctgaccgtcgattacatcgaaaagacctactcggcgggcaagatccccggtggcttcttc
cgccgcgaaggccgcccgtcggaaggcgaaacgctgatctcgcgactgatcgaccgtccg
ctgcgtccgctcttcccggaaggcttctacaacgaagtgcaggtcgtcatccacgtgatg
tcgatcaaccctgaagtccccgcggacatccccgcgctgatcggtgcgtcggcggcgctc
gctgtgtcgggactgccgttcaacggccccgtcggcgctgcgcgcgttgcttacatcaac
aacgagtacgtgctgaacccgacccgctcgcagatcaagggctcgcgtctggacctcgtc
gtcgccggtacggagcgcgcagtgctgatggtcgaatccgaggcggatcaactgccggaa
gacgtgatgcttggcgctgtcgtgttcggtcacgagcagatgcaaacggccatcgacgcg
atccacgaactggtgcgtgaaggcggcaaggctgagtgggagtggcaggctgcgccgaag
aacgaagcgctgatctcgcgcgtcaacgaaatcgcctacaacgaactgctgtcggcgtac
cagacgcgcgacaagcaggctcgctcgacgaagctgaaggaagtgtacgctgcgacgcaa
gccaagctcgaagaagaagcggcagcagcgggcacggtggcagccgacaaggcgtcggtg
ggcaacgtgctgttcgacatcgaagcgaagatcgtccgttcgcagatcctgaacggcgag
ccgcgtatcgacggccgcgacacgcgcacggtgcgccccatcgaaatccgcacgggcgtc
ctgccgcgtacgcacggctcggcgctcttcacgcgcggcgaaacgcaggcgctcgtcgtc
gcgacgctcggcaccaagggcgatgagcagatcatcgacgcgctcgaaggcgagtaccgc
gaccgtttcatgctccactacaacatgccgccattcgcgacgggcgaaacgggccgcgtc
ggctcgccgaagcgccgcgaaatcggtcacggccgtctggcgaagcgcgcgctggccgcg
tgcctgccgagcgccgaagagttcggctactcgatccgcgtcgtgtcggaaatcaccgaa
tcgaatggctcgtcgtcgatggcatcggtgtgcggcggctgtctcgcgctgatggacgca
ggcgtgccgatgaaggcgcacgtcgcgggcatcgcaatggggctgatcctcgaaggcaac
aagttcgcggtgctgacggacatcctcggcgacgaagatcatctcggcgatatggacttc
aaggtggcgggcacggctgacggcgtgacggcactgcagatggacatcaagatccagggc
atcacaaaggaaatcatgcaggtcgcgctggcacaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacctcggctgtgtccggcgtaaacacggaactgtcggcgtacgcgccg
cgcatgatcaccatcaagatcaacccggaaaagatccgggacgtgatcggcaagggcggt
tcggtgatccgcgcgctgacggaagaaacgggcacgacgatcgacatctccgacgacggc
gtcgtcacgatcgcgagcacgagctcggaaggcatggcggaagccaagaagcggatcgag
aacatcacggcggaagtcgaagtcggtcaggtttacgaaggcacggtgctcaagctgctg
gacttcggcgcgatcgtcaacctgctgccgggcaaggacggtctgctgcacatctccgaa
atcgccaacgagcgcatcaaggacatcaatgactacctgaaggaaggccagcaagtgaag
gtgaaggtcattcagacggacgagaagggtcgcgtgcgcctgtcggcgaaagcgctcctg
aacgaagcagcacagacggagccgacgccgcagcagtaa
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