Paraburkholderia phymatum: Bphy_2623
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Entry
Bphy_2623 CDS
T00704
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bph
Paraburkholderia phymatum
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bph03016
]
Bphy_2623
Enzymes [BR:
bph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bphy_2623
Transfer RNA biogenesis [BR:
bph03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Bphy_2623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
ACC71795
UniProt:
B2JH11
LinkDB
All DBs
Position
1:complement(2961574..2963679)
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AA seq
701 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPTAAELMEQADVV
AQDIDLDFLWECAPEDEFPFATLGAEYFGDTFGAVERAALVLRMHGSPIYFRRKGRGQYQ
RAPEEQLKMALASLERKRQQALVQQGYEEELKAGRLPEGFRSKALGLLTKPDKNSIEYKA
LEAAAAARGISQARLMLECGGIPSARALHEARFLSEFFPHGTAFPPVTVGELPEDLPQAE
VDAFSIDDVTTTEIDDAFSVEHLPDNRVRIGIHIAAPALGIQRGDAVDAIARGRLSTVYM
PGDKITMLPDSVVDKFTLAEGGLRPALSLYSIVNRETQEIVASETRAELVYVKNNLRHNT
LDEMVTEEALANGTGDYPHKQDIAVLWPFAQALFEKRQVARAGYGLRREVQRNTDFNFYV
EGEHITITPRRRGSPLDTIVAELAILANSTWGAFLHDHGVPGIYRSQRAFGAPTGPKRTR
MQTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLIACVQHGVTAKLAAPFKPKDADLFA
VVQGFDDTYTAYADHQRRMEYFWCLRWLTQENRKQVAASVVKGDLVRLEEVPLLLHVPGL
GVHARGTRLMLEVMSVDELTVEASVRLLHVLDAPTVTSGGEEEEEVDEEIIDAADESAES
EAEAQAEADTGASAGEPSADGDTPASANDNDSTQHATEQGQ
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggtagtttcaaggcgggcagcgtgctgtcgcgccaa
ggcgacgcgtttcaggtcgaactgccgggcggccgccgcgcgaaggtccgcgcgaaagac
gtgctgatcgagttcgacaagccgacggcggccgaactgatggagcaggccgacgtggtc
gcccaggacatcgatctggacttcctgtgggaatgcgcgccggaagatgagtttccgttt
gcgacgctcggcgcagaatatttcggcgacacgttcggggcggtcgaacgcgcggcgctg
gttctgcgcatgcacggctcgcccatttatttccgccgcaaggggcgcggccagtatcag
cgcgcgccggaagagcagctcaagatggcgctcgcatcgctcgagcgcaagcgccagcag
gcgctcgtgcagcagggctacgaagaggaactgaaggcgggccgtctgcccgaagggttc
cggagcaaggcgctcggcctgctgacgaagccggacaagaattcgatcgagtacaaggcg
ctggaagcggcagccgcggcgcgcggcatttcgcaggctcgcctgatgctggaatgcggc
ggcattccgtccgcccgcgcgctgcacgaagcgcgctttctgtcggaattcttcccgcac
ggcacggcctttccgcccgtgacggtcggtgaattgcctgaagatctgccgcaagccgag
gtcgacgcgttctcgatcgacgacgtgaccacgacggaaatcgacgatgcattttccgtc
gagcatctgcccgataaccgggttcgaatcggcatccacattgccgcgccggcactgggc
atccagcgcggcgatgccgtggacgcgatcgcgcgcggccgcctgtcgaccgtctacatg
ccgggcgacaagatcacgatgctgcccgactccgtcgtcgataaattcaccctggccgaa
ggcggtttgcgtccggcgctgtcgctgtacagcatcgtgaaccgcgagacccaggaaatc
gtcgcgagcgaaacgcgcgccgaactcgtctatgtgaagaacaatctgcgccacaacacg
ctcgacgagatggtgacggaagaggcgcttgccaacggcacgggcgactatccgcacaag
caggacatcgcggtgctgtggccgttcgcgcaggcgctgttcgagaagcgccaggtcgca
cgcgccggttacgggctcaggcgtgaagtgcagcgcaatacggacttcaacttctacgtc
gaaggcgagcacatcaccatcacgccgcgccgccgcggttcgccgctcgacacgatcgtc
gccgaactggcgattctcgcgaactcgacgtggggcgcgttcctgcacgatcacggcgtg
cccggcatctatcgttcgcaacgcgccttcggtgcgccgacgggcccgaagcgcacccgc
atgcagacgacagccgcgccgcacgaaggtctcggcgtcgcgcagtacgcgtggagcacg
tcgccgctgcgccgctatgtcgacctcgtcaaccagtggcagctgattgcctgcgtgcag
cacggcgtgacggcgaagctcgccgcgccgttcaagccgaaggacgccgatctgttcgcg
gtcgtgcaaggcttcgacgacacctataccgcgtacgccgatcatcagcgtcgcatggag
tatttctggtgtctacgctggctcacgcaggaaaaccgcaagcaggtggccgcgtccgtc
gtgaagggcgatctggtgcgcctcgaggaagtgccgctgctcctgcacgtgccgggtctc
ggcgtgcacgcgcgcgggacgcggctgatgctcgaagtgatgtcggtggatgagctgacc
gtcgaggcctccgtgcgtctgctgcacgtgctcgacgcgccgaccgtgacgagtggcggg
gaagaagaggaagaggtcgacgaagaaatcatcgacgccgccgacgaatccgccgaaagc
gaagccgaagcgcaggccgaagccgacacgggcgcgtcggcgggcgagccgtcggccgac
ggcgacacgccggcctccgccaatgacaacgactcgacgcagcacgcgacggagcagggt
caatga
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