Paraburkholderia phymatum: Bphy_2846
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Entry
Bphy_2846 CDS
T00704
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphy_2846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_2846
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_2846
Enzymes [BR:
bph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bphy_2846
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bphy_2846
DNA repair and recombination proteins [BR:
bph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bphy_2846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACC72018
UniProt:
B2JIH2
LinkDB
All DBs
Position
1:complement(3186259..3188106)
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AA seq
615 aa
AA seq
DB search
MSRPLQILNEVFGYPAFRGQQGEIVEHVSAGGDCLVLMPTGGGKSLCYQIPSLVRREAGL
GAGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPER
LMTPRFLDLLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPSVPRIALTATAD
AITRDEIIHRLALDAARVFVSSFDRPNIRYRIVEKDNARSQLLDFIRAEHSRADGTTDAG
VVYCLSRRKVEETADWLKTQGVRALPYHAGMEFEVRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMTYGLGDVVQQRKMIDESEADD
AHKRVQTGKLDALLGLCETASCRRVRLLAYFGEEGKPCGNCDTCLEPPASWDATRESQMA
LSCVFRAQRASGIHFGAGHLIDILRGNRTEKILQRGHEKLSTFGIGAALSEHEWRAVFRQ
LVAFGFLTVDHEGFGSLVLTEISKSVLKGEQTVTMRRYVKPVRTRQSSGRTSERADPTAG
MNARERARWDRLRTWRTETAKSDGVPAYVIFHDATLAEIARNCPESLDDLRHIPGMGARK
LDRFGDELLEVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtccgctccagatcctcaacgaagttttcggttatcccgcgtttcgagggcag
caaggcgaaatcgtcgaacatgtttcggcgggcggcgactgtctggtgctgatgccgacg
ggcggcggcaagtcgctgtgttatcagattccatctctggtgaggcgtgaggcggggttg
ggggcgggcatcgtcgtgtcgccgctgatcgcactgatgcaggatcaggtggcggcgctg
acggaagttggcgtccgcgcggcgtacctgaattcgaccctgtcgggcgccgaagccgct
gcgacggaacgtgcactgcgcgagggcgaaatcgatttgctgtatgtggcgccagagcgt
ctgatgacgccgcgctttctcgatctgctcgagcgcacgcgcatcggcctgttcgcgatc
gacgaagcacattgcgtgtcgcaatgggggcacgatttccgccccgaatacattcagctt
tccgtcctgcacgaacgttttccatcggtgccgcgcatcgcgctcaccgcgaccgccgac
gcgattacgcgcgacgaaatcattcacaggctcgcactcgacgccgcgcgtgtgtttgtg
tcgagcttcgaccggccgaacatccgctatcggatcgtcgaaaaggacaatgcacgctcg
caactgctcgacttcatccgcgcggaacactcgcgtgcagacggcacgaccgacgcaggc
gtcgtgtattgcctgtcgcgccgcaaggtcgaagagacggctgactggttgaagacgcag
ggcgtgcgtgcgctgccgtatcacgcgggaatggaattcgaggtgcgtcaaaagcaccag
gaaatgttccagcgcgaagaaggcatcgtgatgtgcgcgacgattgcgttcggcatgggc
atcgacaaaccggacgtgcgtttcgtcgcgcaccttgacttgccgaagagcgtcgaaggc
tattaccaggagaccggtcgcgcaggccgcgatggtttacctgcaaacgcgtggatgact
tacggactcggcgacgtcgtgcagcagcgcaagatgatcgacgaatccgaagccgacgac
gcgcacaagcgcgtgcaaacgggcaagctcgatgcgttgctcggcctgtgcgaaacggct
tcgtgccggcgcgtgcggctgctcgcctacttcggcgaagaaggcaagccgtgcggcaac
tgcgatacgtgcctcgagccgccagcgtcgtgggacgcgacgcgcgaatcgcaaatggcg
ctctcgtgcgtattccgcgcgcagcgcgcgagcggaatccactttggcgcaggacacctg
atcgacattctccgcggcaatcgcaccgagaagattctgcagcgcggtcacgagaagctg
agtacgtttggaattggcgcggctttgtccgagcatgaatggcgcgcagtgtttcgccag
ttggtggcattcggatttctcaccgtcgatcacgagggattcggctcgcttgtgctgaca
gaaattagcaagtcggtcctgaagggcgaacagaccgtgaccatgcgccgttacgtgaag
cctgtgcggacgcgacagtcgtccggtcgcaccagcgagcgcgccgacccgacggctggc
atgaacgcgcgcgagcgcgctcggtgggatcggctgcgcacatggcgcaccgagacggcg
aaaagcgatggcgtcccggcctacgtcatcttccacgacgcgaccttggcggaaattgcg
cggaattgccctgaatcgctcgacgatctgcggcacattcccggcatgggcgcgcgtaag
ctcgaccgtttcggcgacgaactgcttgaagtcgtcgccgcggattga
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