Paraburkholderia phymatum: Bphy_5193
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Entry
Bphy_5193 CDS
T00704
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bphy_5193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bph03019
]
Bphy_5193
Enzymes [BR:
bph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bphy_5193
Messenger RNA biogenesis [BR:
bph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bphy_5193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACC74276
UniProt:
B2JME1
LinkDB
All DBs
Position
2:2313035..2314480
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AA seq
481 aa
AA seq
DB search
MSFASLGLIDRLLRNVQDLHYQTPTPVQVKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRVRVLVLVPTRELAEQVLQSFVVYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFSDDIRAMAANFLRGPVHISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVA
ENNWDHALVFVKTRTGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQVHMLVA
TDVAARGLDIDHLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLPREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKGLQAAPGDMHLPGKKTRPK
SGESNRKPAAQRDAAAGKETSVTSGSPFSVQRPRSKPARQPVAAARQPAGKGAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgatcgcttgctgcgtaatgtgcaggacctccac
taccaaacacctacaccggtgcaggtcaaggcgattcctgctgtgctcggcggcaaggac
gtcatggcggcagcacagacgggcacgggcaaaaccgcgggttttgcgttgcccctgttg
caacggctggtgcaacacggtccggcggtgtccagcaatcgcgtgcgtgttctggtcctc
gtgcccacgcgcgaactggccgagcaagtgctgcaaagcttcgtcgtttacggcaaaggc
ctcgacttacgatttctggcggcctacggcggtgtcagtatcaacccgcagatgatgaag
ttgcgcaaaggcgtggatgtgcttgttgcgacgccgggccgtttgctcgatctcaatcgt
cagaacgcagtgcagttcgatcaggtgcaaacgctggtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgaactcaacgccgtctttgctgccttgcccgcgcagcgg
caaacgctgttgttctctgcgacgttttccgatgatatccgcgcaatggcagcgaacttt
ctgcgtggcccggtccatatcagcgtcagcccgcccaacgccacggcaagcaagatcagg
cagtgggtggtgcccgtcgacaaaaggaacaagccggacctcttcatgcacctcgtggcc
gagaacaactgggatcacgcgctggtgttcgtcaaaacacgcactggcgtggattacctg
gcggccatgctggacgaagcgggctatgcggtcgacacgatccacggcgacaagccgcaa
ccggcgcgcctgcgtgcgctggagcgcttcaaggcgggccaggtacacatgctggtagcc
accgatgtggctgcacgcgggctggatatcgaccatcttccgctggtgatcaacgttgat
ctgcccatcgtggcgcaagactatgtgcaccgtattggccgtaccggccgcgcgggtgcg
agcggcgtggccgtgtcacttgtatgtgccgatgaagcgccgcaactggccgcgattgaa
gcgctgatccggcaaacgctgccccgtgaagaggagcccggttttgaagccgaacaccgc
gtgccgcaaaccagcgcgacgggccagatcatcaagaaacccaaaaagccgaagaagcca
aagggactgcaagctgcgccgggcgacatgcacctgcctggcaaaaagactcgaccgaaa
agtggcgagagcaatcgcaaacctgcggcgcagcgcgacgcagccgcgggtaaagagacg
agcgtgaccagcggtagcccattcagcgtgcaaaggccacgcagcaagcccgcccgccag
ccggttgcggctgcgcgacaacctgctggcaaaggcgctggtggccgaggcaaacgccaa
ccctga
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