Paraburkholderia phymatum: Bphy_5309
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Entry
Bphy_5309 CDS
T00704
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Bphy_5309
09124 Replication and repair
03420 Nucleotide excision repair
Bphy_5309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bph03021
]
Bphy_5309
03036 Chromosome and associated proteins [BR:
bph03036
]
Bphy_5309
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_5309
Enzymes [BR:
bph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Bphy_5309
Transcription machinery [BR:
bph03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Bphy_5309
Chromosome and associated proteins [BR:
bph03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Bphy_5309
DNA repair and recombination proteins [BR:
bph03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Bphy_5309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
DUF7711
GlgS
Motif
Other DBs
NCBI-ProteinID:
ACC74387
UniProt:
B2JMZ4
LinkDB
All DBs
Position
2:2444733..2447003
Genome browser
AA seq
756 aa
AA seq
DB search
MTYVVAVRTLCEFTARRGDLDLRFTPAPSALEGIAGHQAVAARRASGYEAEITLTGAHRG
LTVRGRADGYDAALNRLEEIKTHRGDLERMPGNHRALHWAQARVYGHLLCETRGLDALTV
ALVYFDIGDQKETVLTEQHTAASLRAFFEDQCERFVAWAAHEEAHRNARNAALNALRFPY
GEFRSGQRELSVAAFRAARDGRCLMAQAPTGIGKTLGTIFPLLKACGADHLDRVFFLTAK
TPGRALALDAIESLHRSEAALPVRTLELVARDKACEHPDASCDGESCPLARGFYDRLPAA
RDRALQARTLDRAAVREAALAHGVCPYYLAQEMARWCDVVIGDYNYYFDSSAMLYALTQL
NGWRVAVLADEAHNLPDRARRMYSATLDQAAFRGARHSAPATLKKPFDRLNREWNALNRE
RNVAYEVLPDVPAKLQSAVQNLIAAIGDHLAQAPQAVDESALRFYFDALHFMSLVEQFGG
HSIVDVSLDSHSGLARAKPATSICVRNVIPAPFLKPRYAAARATIIFSGTLSPQHFYRDM
LGLPDDTGWLDVEGPFRAEQLQVRVAHRVSTRWRDRERSLEPIVDLIAQQYAERPGNYLG
FLSSFDYLQRVADSMRERHPHVPIWTQAPRMDETARDAFLARFAADGAGVGFAVLGGAFS
EGIDLVGERLIGAFIATLGLPQMNEVNEQMRRTFDEQFGNGYDYAYLYPGMQKVVQAAGR
VIRTEHDAGVVHLIDDRYTRADVRRLLPRWWKVARA
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgacgtatgtcgtcgcggtgcgcacgctgtgcgagttcaccgcgcggcgcggcgatctc
gatctgcgcttcacgcccgcgccttcggcgctggaaggcatcgccgggcatcaagccgtg
gccgcgcggcgcgcgtcgggctacgaggcggaaatcacgttgacgggcgcgcatcgcggg
ctgaccgtgcgcggccgcgccgacggctacgacgcggcgctcaaccggctcgaagagatc
aagacgcatcgcggcgaccttgaacggatgcccgggaaccatcgcgcactgcattgggcg
caggcgcgcgtgtacggtcatctgctgtgcgagacgcgcggcctcgacgcattgacggtc
gcgctcgtgtacttcgatatcggcgaccagaaggaaacggtgctgacggaacagcatacg
gcggcctcgttgcgcgcgttcttcgaggatcaatgcgagcgcttcgttgcctgggcggcg
cacgaagaagcgcatcgcaacgcgcgcaatgccgcgctcaacgcgttgcgctttccgtac
ggcgaatttcgcagcggacagcgcgaactctcggtggccgcgttccgtgccgcgcgcgac
ggccgctgtctgatggcgcaggcgccgacgggtatcggcaagacgctcggcacgattttt
ccgctgctcaaggcgtgcggcgcggatcatctggaccgcgtgttctttctgacggccaag
acgccgggccgcgcgctcgcgctcgacgcgatcgaatcgctgcatcgaagcgaagccgcg
ctgccggtgcgcacgctcgaactggtcgcgcgcgacaaggcctgcgagcatcccgacgca
tcctgcgacggcgaatcgtgtccgctcgcgcggggcttctacgaccgcttgcccgccgcg
cgcgacagggccttgcaggcgcgcacgctcgaccgggcggccgtgcgcgaagcggcgctc
gcgcacggcgtctgtccgtactatctcgcgcaggagatggcgcgctggtgcgacgtcgtg
atcggcgattacaactactacttcgacagcagcgcgatgctgtatgcgctcacgcagctg
aatggctggcgcgtggccgtgctcgccgacgaagcacacaatcttcccgatcgcgcgcgc
cgcatgtatagcgcgacgctcgatcaagccgcgtttcgcggcgcgcgtcatagcgcgccc
gctacattgaagaagccgttcgaccgtttgaaccgcgaatggaatgcattgaaccgcgag
cgcaacgtggcatatgaagtgctgccggatgtgcctgcgaagctgcagtcggcggtgcag
aatctgattgcagcgattggcgaccaccttgcgcaagcgccgcaagccgtagacgaaagc
gcactgcgtttctatttcgatgcgctgcatttcatgtcgctcgtcgagcagttcggcggt
cactcgatcgtcgacgtgtcgctcgattcgcattcgggtttggcgcgcgcgaagcccgcg
acatcgatctgcgtgcgcaacgtgatacccgcgccgttcctcaagccgcgctacgcggcc
gcgcgcgcgacgattatcttttcgggcacgctcagtccgcagcacttctatcgcgacatg
ctcggtctgcccgacgatacgggctggctcgacgttgaagggccgttcagggcggagcag
ctgcaagtgcgtgtcgcacatcgcgtgtcgacgcgctggcgcgaccgcgagcgttcgctc
gaaccgatcgtcgatctgatcgcacagcaatacgccgagcgtcccggcaattatctcggc
tttctgagcagcttcgactatttgcagcgcgtggccgattcgatgcgcgagcggcatcca
cacgtgcccatctggacccaggcgccgcgcatggacgaaacggcgcgcgacgcattcctt
gcgcgcttcgcagcggacggtgcgggtgtcggcttcgccgtgctgggcggcgcgttttcc
gaaggcatcgatctcgtcggcgaacggctgatcggcgcgttcatcgcgacactcggcttg
ccgcagatgaacgaggtcaacgaacagatgcgccgcacgttcgatgagcagttcggcaac
gggtacgactacgcgtatctgtatccgggcatgcagaaagtcgtgcaggccgcggggcgc
gtgatccgcaccgaacacgatgcgggcgtcgtgcatctgatcgacgaccgctatacgcgc
gccgatgtcaggcggctgttgccgcgctggtggaaggtggctcgcgcgtga
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integrated database retrieval system
