Paraburkholderia phymatum: Bphy_5954
Help
Entry
Bphy_5954 CDS
T00704
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
bph
Paraburkholderia phymatum
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bph03000
]
Bphy_5954
Transcription factors [BR:
bph03000
]
Prokaryotic type
Helix-turn-helix
Other families
Bphy_5954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
GAF
HTH_8
AAA_5
PAS
PAS_4
Mg_chelatase
AAA_2
HTH_7
HTH_23
PAS_9
HTH_30
AAA_16
HTH_29
HTH_50
TrmB
HTH_28
HTH_22
AAA_3
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
ACC75018
UniProt:
B2JVP1
LinkDB
All DBs
Position
pBPHY01:complement(477303..479336)
Genome browser
AA seq
677 aa
AA seq
DB search
MSSCQPLAGQTSQVEAIMRTRPGGFAPSAPVVRSWTRCIEDYRLDPDVCLPPPVMTSAEL
ASRREQNASLVDCAKLEMATLYQQLGDSELAVVLTDSDGVILHLASSPEFAGEVEDWGLC
AGAVWNEREAGTNGMGTCLAEGEAIAVRQHEHFYQRYTSLTCAAVPVFDEGGSIAGVLDV
TSRSPLLQQHSLVLVGMSRQMIENRLLDARHTHAFRIQFHSRPEFVGTLHAGKLTVDDDG
MILGANRSALAQLGFATLDEIAGKPVTDVFNASLAEIVARSTRSSFYPVAIYRTHASSRF
FVVAQEPRDRAAREAIAPARAEASNHDASSALTRRPARATRTASPLRQGTARVEFGDAQI
ASQFDLGARVIDRGIAVLVHGETGSGKEVFANALHAASERSNGPFVAVNCASLPEHLIES
ELFGYRAGAFTGAQREGRRGKILQADGGTLFLDEIGDMPLALQARLLRVLEEREVTPLGS
ESVVKVDFQLVSASHRDLNELVESGQFREDLYYRLNGVMLELPPLRARKDKLALIRHLLE
KERTPALRLSADVRQILLDSDWPGNIRQLRNVLRTATALCDGDELTTAHLPAWLVQREKN
LNRPRAAGASTALSDTDDCADMEEVSNAPLNAILQAEREALLALLDKHRWNVSQVALALG
ITRNTLYRKMRRVNIKT
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatgccagccgctcgcgggacaaaccagccaggtcgaagccatcatgcgtacg
cgccctggcggattcgcaccgagcgcgccagtggttcgctcatggacgcgctgcatcgaa
gactacagactcgatcccgacgtgtgcctgccgcctcccgtgatgaccagcgccgaactc
gcatcgcgacgcgaacagaatgccagtctggtcgattgcgcgaagctcgaaatggccacg
ctttatcagcagctcggcgactcggagcttgccgtcgtgttgacggatagcgatggcgtg
atcctgcatctcgcgtcgtcgcccgagtttgcaggcgaggtcgaggactggggactgtgc
gcgggcgccgtgtggaacgaacgcgaagcgggcacgaacggcatgggcacctgcctcgcg
gaaggcgaagcgatcgccgtgcgtcagcacgaacatttctatcagcgctatacctcgctc
acatgcgccgccgtgcccgtattcgacgaaggaggctccatcgcgggcgtgctcgacgtc
accagccgttcgccgctgttgcagcagcattcgctcgtgctggtcggcatgtcgcggcag
atgatcgaaaaccgtctgctcgacgcccgtcatacacacgcgttccgtattcagtttcac
agcaggcccgagttcgtcggcaccttgcatgccggcaagctcaccgtcgacgatgacggc
atgattctcggcgcgaaccgcagcgcgctcgcgcaactcggcttcgcgacgctcgacgag
atcgccggcaagccggtcaccgacgttttcaatgcgtcgctggccgagatcgtcgcgcgc
agcacgcgcagttcgttctatcccgtcgcgatctatcgcacgcatgcgtcgagccgcttc
ttcgtcgtcgctcaggagccgcgcgatcgtgccgcacgcgaagctatcgcgcccgcgcgt
gcggaagcatcgaaccacgatgcgtcgtcggcactcacgcggcgtccggctcgcgcaacg
cgcacggcgagcccattgcgccagggcacagcgcgcgtggaattcggcgatgcgcagatc
gccagccagttcgatctcggcgcgcgtgtgatcgatcgcggtatcgcggtgctcgttcac
ggcgaaacgggcagcggcaaggaggtgttcgccaacgcactgcatgccgcaagcgaacgc
agcaacggtccgttcgtcgcggtcaactgtgcttcgctgccggaacatctgatcgagagc
gaactgttcggctatcgcgcgggcgctttcacgggcgcgcagcgcgaaggacggcgcggc
aagattctgcaggccgacggcggcacgctgtttctcgatgaaatcggcgacatgccgctc
gccctgcaagcgcggctgctgcgcgtgctcgaagagcgcgaagtcacgccgctcggttca
gaatctgtcgtcaaggtcgactttcagctggtgagcgcgagtcatcgcgatctcaacgaa
ctcgtcgaaagcgggcagttccgtgaggatctctactatcggctcaatggcgtcatgctg
gagcttccgcccctgcgcgcccgcaaggacaagctcgcgctgatccggcatttgctggaa
aaggagcgcacgcctgcgctccgactttcggcggacgtgcgacagattctgctcgacagc
gactggcccggcaatatccgtcagttgcgcaacgtgctgcgcacggcgacggcgctctgc
gacggcgatgaactcaccacggcgcatctgcccgcgtggctcgtgcagcgcgagaaaaac
ctgaatcgcccgcgagccgccggcgcgtccactgccctctccgacaccgacgattgcgcc
gatatggaagaggtgtcgaacgcgccgctcaacgcgattctgcaggccgaacgcgaggcg
ctgctcgcgttgctcgacaagcatcgctggaacgtgagccaggttgcgctcgcgctcggc
atcacacgcaatacgctctaccggaaaatgagacgcgtgaacatcaagacgtga
DBGET
integrated database retrieval system
