Battus philenor (pipe-vine swallowtail): 137919770
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Entry
137919770 CDS
T10485
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bphi Battus philenor (pipe-vine swallowtail)
Pathway
bphi03008
Ribosome biogenesis in eukaryotes
bphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bphi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
137919770 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
137919770 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bphi03021
]
137919770 (Rat1)
03019 Messenger RNA biogenesis [BR:
bphi03019
]
137919770 (Rat1)
03009 Ribosome biogenesis [BR:
bphi03009
]
137919770 (Rat1)
03016 Transfer RNA biogenesis [BR:
bphi03016
]
137919770 (Rat1)
Transcription machinery [BR:
bphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137919770 (Rat1)
Messenger RNA biogenesis [BR:
bphi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
137919770 (Rat1)
Ribosome biogenesis [BR:
bphi03009
]
Eukaryotic type
Pre-60S particles
RNases
137919770 (Rat1)
Transfer RNA biogenesis [BR:
bphi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
137919770 (Rat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
137919770
NCBI-ProteinID:
XP_068619054
LinkDB
All DBs
Position
Unknown
AA seq
957 aa
AA seq
DB search
MGVPAFFRWLSRKYSSVIVECIEQKPTDVDGELVHIDSSLPNPNGLEFDNLYLDMNGIIH
PCTHPDDKPAPKDEDEMMVAIFECIDRLFRIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKESQEKIEEIARIRSELQSKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH
DRLNTDPGWKNIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTHHVLCGADADLIML
GLATHEPNFTIIREEFKPNKARPCDVCGQLGHEMKECTGTNPDASVVRSDPAFGAQDNFI
FVRLNVLREYLEKELQMPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDR
LVNLYKKCVYKTKGWVTDSGDVNLERVQVIMDELGRMEDDIFKRRHNNELNFRARDKARK
KQQPVNFKLLEKTQFAPMSIGAAGKPVQNARKEAAEIRMAGMNAAAEEERHRGRKRSAAE
AGLQEEEEDEDKHDEVRLWEDGFKERYYESKFEVARDNMEFRYRVALQYVRGLCWVLRYY
YQGCASWKWYFPYHYAPFASDFVNICGLSTKFEKGTQPFRPLEQLMGVFPAASSQHVPPA
WAPLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYNDLSQAE
KLRNMRGHDRLYVSPSHPSYGALAALYSEAGHQLRALVASEQRYPYRSQGVRGDVMLSSD
NVCVGGQLSSPVVGLPPVLDNRAVCVRYEDPQYPEEFIFPARRLKGATEPARVLKPGDLS
AQENRNWRPQIGMVRSNTVASLEMAGHRMLGHHIPRDRGYATVPPPQHHQQGYGQHQRSQ
SFGPQRSGYIPHNPAARAYNTQPDHNSHQNGQEYGQNQHRQGYRQGYNQGGQGYTSQGHG
GYQSNRYGQGHHGGGQNHQGSGQGYHGGQKYTRGPQSDRRPTSGSHRYQGNQGSTWR
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagctttcttccgctggcttagccgaaaatactccagcgtaatagtggaa
tgcatcgaacagaagcctacagatgtggacggcgaattggtacacatagattcctctctg
ccaaatcccaacggattagaattcgataatttgtatttagatatgaatgggattatacat
ccatgtacgcatccggacgacaagcccgcgccaaaggatgaggacgagatgatggtggcc
atcttcgagtgcattgaccgattgtttcgtattgtacgccccaggagactgttgtacatg
gccattgacggagtggcacccagagctaaaatgaatcagcagagatcacgacgtttccga
gcctcaaaggagtctcaggagaaaattgaagagattgcacgtattcgctcagaactacaa
tctaagggtgcttacttgcccccagagaggcctaaggaagcccactttgactctaactgt
attacaccagggactccattcatggatcgactgagcaaatgcttacactactacattcat
gacagattaaatactgaccctggatggaagaatattaaagtgattctctccgatgcaaat
gtacctggagaaggggagcataagattatggactacattcgaagacagagagctcaaccg
gaccacgatccgaacacccaccacgtgctatgtggcgctgacgctgatctgatcatgctg
gggctggctacccacgagccgaactttacgatcataagggaggagttcaagcctaacaag
gcccggccttgtgatgtttgtggacagttgggacacgagatgaaagaatgtacgggaact
aatccagacgcatccgtggtgcgctccgacccggccttcggtgcccaggataacttcatc
ttcgtccgtttgaacgtgctccgggagtatttggagaaggagttgcagatgccaaacttg
cctttcccttatgacttcgagcgcgcgctggacgactgggtgttcatgtgtttcttcgtt
ggcaatgacttcctgccgcacctgcccagcctcgagatccgtgagggtgctatagatcga
ctcgtcaatttgtacaagaagtgcgtctataaaactaaaggttgggtgacggactccggt
gacgtgaacctggagcgcgtgcaagtgataatggacgagctggggcgcatggaggacgac
atcttcaagcggcgtcacaacaacgagctgaacttccgagcgcgcgacaaggccaggaag
aagcagcagcctgtcaacttcaagctactggaaaagacacagttcgcacccatgtctata
ggggcagccggcaaacctgtgcagaacgcgcgcaaagaggcggccgaaattcgcatggca
ggaatgaacgcagccgcagaagaagagaggcaccgtggtagaaagagatccgcagcagaa
gccggactgcaggaggaagaagaagacgaggataagcatgatgaggtgcgcctttgggag
gatggcttcaaagagcgctactatgaaagcaagttcgaggtggccagggacaatatggag
ttcaggtatcgcgtggcgctgcagtacgtgcgcgggctgtgctgggtgcttcgctactac
taccagggctgcgccagctggaagtggtacttcccctaccactacgcgccattcgcttca
gacttcgtcaacatctgcggtctgtccaccaagttcgagaaaggcacccagccgttccgg
ccgttggagcagctgatgggggtgttcccggccgccagctcccagcatgtgccgccggcc
tgggcaccgctcatgagcgaccccttttcacctattatagatttttatcctacggacttc
aagatagacctgaacggcaagaagttcgcgtggcagggcgtggcactgctgccattcgtg
gacgagaaccgtctcttcaaggccttggagccttactataacgacctctcgcaagctgag
aagctgagaaacatgcgaggccacgaccgcctgtacgtgtctccgtcgcaccccagctac
ggtgcgttggccgcgctctactcggaggcaggtcaccagctgcgcgctctcgtggctagc
gagcagcgctacccttaccgcagtcagggtgttcgcggtgacgtcatgctcagctctgac
aatgtctgcgtcggtgggcaactgtcatcaccagtggtaggcctgccgccagtgctagac
aaccgggcagtgtgcgtacgctacgaagatcctcagtaccctgaggagttcatcttcccg
gccaggagattgaaaggagcgacggagcccgcgcgcgttctcaaacctggagaccttagc
gcgcaggagaacaggaattggaggccgcagattggcatggtgcggtccaacacggtggcg
agcctggagatggcgggacacaggatgctgggtcaccacattcctcgcgaccgcggttac
gctacagtaccaccaccgcagcaccaccagcaaggatacggacagcaccaacgttcgcag
tcgtttggtccgcagcgcagtgggtacataccgcacaaccccgccgcgcgcgcctacaac
acgcagcccgaccacaacagccatcagaacggtcaggagtacgggcaaaatcagcaccgg
caggggtaccgtcagggatacaaccagggaggccagggctacacttcccagggccacggc
ggctaccagtccaacagatatgggcagggccaccacggaggcggacaaaatcatcaagga
agtggtcagggttatcacggaggccagaaatacacaagaggaccacagtccgatcggcgt
ccgacctccggctcccataggtatcaaggcaaccagggctccacatggcgttga
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integrated database retrieval system
