Battus philenor (pipe-vine swallowtail): 137923269
Help
Entry
137923269 CDS
T10485
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bphi Battus philenor (pipe-vine swallowtail)
Pathway
bphi03013
Nucleocytoplasmic transport
bphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bphi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137923269 (Upf1)
03015 mRNA surveillance pathway
137923269 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bphi03019
]
137923269 (Upf1)
Enzymes [BR:
bphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137923269 (Upf1)
5.6.2.5 RNA 5'-3' helicase
137923269 (Upf1)
Messenger RNA biogenesis [BR:
bphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137923269 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
137923269 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
AAA_16
AAA_22
SRP54
nSTAND3
nSTAND_NTPase5
UvrD_C_2
zf-B_box_Trim66
Motif
Other DBs
NCBI-GeneID:
137923269
NCBI-ProteinID:
XP_068622566
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQ
VNGIGRPDLSSKVASVANAIAELQFEEEDEALYGSKELPEHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSETEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKTWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLECTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQSGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESTVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEDRRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSIYDRARPPRDPLAYVGARVSPHAGVPPAAFPQRS
APRTKRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESTAPDCPSQPDGLLSQDSSYQGGF
RARCSQY
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcatatggaccaagttcccaaactctaacgtttttggatacagaagaa
gcggatcttattggagctgatactcaaggctcagagtttgaattcacagattttacactc
ccatctcaaagtcaaacgcaggcatcgcaacacgaccatggactaagttcatcaaaccag
gtgaatggaattggacgtcctgacttaagctctaaggttgctagcgttgctaacgctatt
gcagagctacagttcgaagaagaagatgaagctttgtatggaagtaaagaactacctgaa
catgcatgcaaatactgtggaatccatgacccagccactgtcgttatgtgtaacatatgc
aataagtggttttgtaatgggcgtggaaatacatctggttcacatattatcaaccattta
gtgagagccaagcataaggaagctgctttacatagagatggacctctgggtgaaacctta
ctggagtgttactcatgtggagcacggaatgtttttgttcttggcttcatacctgccaag
gctgattctgttgtagtattactttgtcgtcaaccctgtgcagcacaaagttctctgaaa
gacatgaattgggaccaggaacaatggaaaccactgatatctgatcgtgcatttttgtca
tggctagtgaaggttccctcagaaactgagcaaatgagagcccgtcaagtgacacctcaa
caaataggccgtcttgaagaattgtggcgcgacaatgttgatgcaacctttcaagattta
gaaaaaccaggagtagatgaagaacctcatcaggttctcttgagatatgaagatggttac
caataccagaatatttttggtcctctcgtcaagctagaagctgattatgacaagcggctc
aaagaatcccaaactcaagaaggaattgaagttcgttgggatgtggggcttaacaagaaa
accattgcttatttcacacttgctaaaactgacagtgacatgaagctcatgcatggggat
gaactaagattgagatatgtgggagagctacacaaaacatggtctggtgtaggtcacgtt
atcaaagtgcctgacaactatggtgatgatgttggtcttgaattaaaaagtggtgcagga
gcaccactcgagtgtacctctaactttgtggtggactttatttggaagagtacttctttt
gatagaatgcagcttgctcttcgcaaattcgctgtagacgattcgtcagtctctggatat
atttatcgtcgcctccttggccatgaagtagaagaagtgctttttcgcgtgcatctaccg
aagcatttcagtgcacctaatctacctgacctcaatcgctcccaggtctatgctgtaaaa
catgcgcttcagcgccctttgtcccttattcaaggtcccccaggaacaggaaaaactgtt
acatcagctactattgtttaccaacttgttaggcaaagcggagggcctgtgctggtttgt
gcgccatctaatacggctgtggatcagttaactgaaaaaatacatagaactgggctgaaa
gttgtccgattatgtgcaaagtccagagaagctatggaatcaacagtatcattcctagca
ttgcatgaacaagcacgtgccttgggctcggccgattctgaattgcgaaaattaacaaga
ttgaaggaagaagcgggtgaattgtcggccgcggatgaaaggagataccgtgcgttacgg
cgcgctgcggaaagacgtttgttagatgcagctgatgtagtttgtaccacttgtgtgggt
gcaggagacccaagggttgcacgaatgcgattccaatccatccttattgatgaaggcatg
caatccacagagccggaatgcatggtgcctgttgtactaggggccagacaactcatcctt
gttggagaccactgccaattgggtccagtggtaatgtgtaaaaaggctgcaaaagcaggc
cttagtcaaagtcttttcgaacgccttgttgtactcggaatacgacctttccgcctggaa
gtgcagtaccgtatgcatccagagctgtcgcgcttcccgtccgactttttctacgaagga
tcgctacaaaacggcgtcagtgctgaggatcgaagattacataaaatagattttccttgg
ccgcgaccagatcgtccaatgttcttttatgtgacccaaggacaagaagagattgcagga
tctggcacatcatacttaaaccgaactgaagctgccaatgttgaaaagttgactacccgt
tttttaaaagccggtgtccgtcctgaacaaattggtatcatcactccttatgagggtcag
cgatcttatcttgttcaacacatgcagtaccagggaagcctgcacgcgaaactttatcaa
gaaattgaagtggctagcgttgatgcgttccaaggtcgagaaaaagatataataatcatg
tcttgcgttcggtcaaatgagcatcaaggcattggcttcttaagtgatcctcggcgcctt
aatgttgctttgactcgtgcgaaatatggtctcattgttgtgggaaacccaaaggtattg
agtaagcaaccgctatggaatcacctgcttgcgttttacaaggagcgccgcgtgttgaca
gaaggcccactgtccaaccttaaagaatctgcaattcaatttgccaagccgaagaaatta
gtaaacgcccagaatccaggttctcacttcatgtctacttcaatgttcgatgcgcgcgag
gcgatggtgccgggctctatatacgatcgagcgcgacctcctagagatccgttggcttac
gtgggggcaagagtgtccccgcatgcaggcgtcccgcctgccgctttcccgcagcggtcc
gcaccgcgcactaaacgccgtcccccgcgcctttcgcaagaaccgctatcgcagcagccg
ccactctcactgtcccagggcgcctcgcaaccagatttcagtcaggaatcgactgcaccc
gactgtccttcccaaccggacgggctgttgtcacaagattcctcgtaccagggcggattc
cgcgcgcgttgcagccagtactga
DBGET
integrated database retrieval system
