Battus philenor (pipe-vine swallowtail): 137923846
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Entry
137923846 CDS
T10485
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bphi Battus philenor (pipe-vine swallowtail)
Pathway
bphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137923846 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bphi03021
]
137923846 (Pcf11)
03019 Messenger RNA biogenesis [BR:
bphi03019
]
137923846 (Pcf11)
Transcription machinery [BR:
bphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137923846 (Pcf11)
Messenger RNA biogenesis [BR:
bphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137923846 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
zf_PCFS4
Pcf11_C
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
137923846
NCBI-ProteinID:
XP_068623227
LinkDB
All DBs
Position
Unknown
AA seq
1717 aa
AA seq
DB search
MSKEIAEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVDTVEKHLEKVHPEIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVDEKIRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPQQSNIHVNPNFLKKNAAPTTSTTTTPLTEDEENMRSILVKKE
QELLMLQRKKIEMELEQTRRQLELAEKNAKKAPVAGAVPPMPVALVSPVPSTVAPAVSVP
IAPPVSVKQRLGPPVNKPPGGRIAPVSGALVTARRDPRLARRPPPQPSHPPQGTPLPQVA
HVPHAPIAANGPPIASNVFDIKPLDRVTKRKNVITIDVRPDAAIKDPRRRDPRLSDRARE
RRVKKNDEERERKREEQRAERDKDKTENNRVVDNYIDRLQIPDPKKINKLPPIPKINRDE
NKDEDIPAPNKKRRENPKERRKKKNHNSSKDSSSSSSPEKRNKLKDIKKKPKEKMEVEEK
SAEPEVVTFKELKNFNKDRYMRRNKEKSESPERVEEKKDDKPDSEISMNFSDVLDVVMEN
KDVDLRVLHPVIAETTPAPVAHKRPSTEALEGKVKKNKLDKFDILFGNEDVDLRQLPQVD
EVVPPPPPVITDSPKMDISLDDPEENTASPKQKDWHEVKEKKDDTKKTPSKLDLVRAKLA
EATKGKDRLGRPLLFSKSPNARVNDLFKSLQNVFVHTLTGIERERRRTLSSDDADQKSDS
GDDITPEDHKKTISIIMSQAKEQFSDGKLDKNQYNTLMYQVLQLNEKLKLKEAKQRESLE
QSKRKLKAHINEENQKVATPKTSPSERNNFGDIDERVTPAFLDTPSDSQNYMQDSDMRMN
STHSDVVEGGKSKGLLPLPPIMPLYMGPYPMWRGNRPRMEEFGPRRFRGPMPPFFRGKFD
KRVPRLPFDPRLPLPLPTPKLGMCQGECPLKPYERAESPPPIGTPGHTIPPTNFQILEYI
DQDPVKTIQIDGVPREIRFYGETAVIMLDWDDPREIKFLPGCRRVTFDNKDSVLLNFNES
YKQVEIDDQVFDIRFGAPTRELYINGRWYECFFGGQPLGVLIDGKPRLLHLEGPLPQVDI
GKTKRTDLVAGKINLIINATQMCPVYLDAKVQKILINGQFFTLRFVDALRTVLINEKPFK
VEFGDLPRPIFIGKEKFFVRFSALPRNIKPGQVQIADMEGMSVPEPLKPAPLVDTVTVEE
EPETNEEPVQRPTKTPSPDGENQGLDMLASLMPSSMAPASGSEYSVAEPMFTKPDKIPGL
ETPLEEKPANPLPALSNININDLFAKLVATGIVQMPKENKEEVKTDEVKPKHVEDKTVIH
KVDLLKPETLKIKQPALVSRLYGGMQCSGCGARFPPEHTVRYSQHLDWHFRQNRRERDSA
RRAHSRSWHYDLPDWLRYEELEELDEREKNWFETNATNTDSGIGGEVPVEAPSAAAGAPA
AAHCALCGDLFPQFYNEDREEWHLRNAVGYNDQHYHPLCLADYKASLAKEEPEELKEDIA
DVEKIEPIEIKDTDEVRLASDDESDVEVLEIKEPIVEALEIEEGSDCESDDDDVVLKAEP
VEQVVLEDVDTDDETCELRKERDRTAMEDFSKVKVKQEPIDPDDEPVITAEEERLPTTIE
TTHTTVTSSIDGNVQLETPTTSVLPIGGIRINITKTMPTYTNQEPALEDISADDEPLPPG
EEPELEFKLKPELEGIQFSRQPPVNKGSELSGLCSIM
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggaaattgccgaggagtatgcgtccagtctagcggatcttacggtcaacagc
aaaccccttataaacatgcttacgatattagcggaagaaaatatcgagcatgctggggtt
atcgttgataccgtggagaaacacttggagaaggttcatccagaaatcaagctgccagtt
ctgtacttagttgattcaattatcaagaatgtcggaggagcatacacccagaaattctct
caaagcattgttaatatgtttacacggaccttcaagcaggttgatgaaaaaataaggtca
cagatgtttaagctgcgtgaaacatggcacgatgtgttccctgcgacaaagctttatcag
ttggatgtgaaagttaacctgattgatccagcatggccgatacaagcccagcctcaacag
tctaacatccatgtaaatccaaattttctgaaaaagaatgcggctccaacaacgagcacc
actacaacacctctaacagaagatgaagaaaacatgagaagtatcctcgttaagaaagaa
caagagttgctcatgcttcaaagaaagaaaattgaaatggagttggagcagactaggagg
cagctggagttggcagaaaaaaatgctaaaaaggcgccggtcgcgggcgcagttccgcct
atgccagtggcgctggtgagcccggtgccttctaccgtggcccccgcagtgtctgtccca
atagcaccacctgtctccgtcaaacagcggcttggaccgccggtaaacaaaccaccgggt
ggccgcatcgctccagtcagcggcgctttggtgaccgcgcgacgagacccgcgcctcgca
cgccgccccccaccgcagccttcacacccgccacaagggacgcccttgccccaagtcgcg
catgtgcctcacgcaccgatcgccgctaacggcccgccgatagcctccaacgtattcgat
atcaagccattggaccgtgtcaccaaacgcaaaaacgtcatcactattgatgtcagacct
gacgctgccatcaaagacccacggcgccgcgatccgaggctctcagaccgcgctcgcgag
cgacgagtcaagaaaaacgacgaggagcgagagaggaaacgagaggaacaacgcgcagaa
agagacaaagataaaaccgaaaacaatcgcgtggtcgacaactacatcgatcggctccaa
atacccgaccccaagaaaattaataaactaccgcccattcccaaaataaacagggacgag
aataaagatgaagatattcccgcgcccaacaaaaagagaagagagaaccctaaggagcga
agaaaaaagaaaaaccacaactccagtaaagacagctctagtagctcatcgcctgaaaag
cgaaataagttgaaagacattaaaaagaaaccaaaagaaaaaatggaggtagaagaaaaa
tctgcagaaccagaagttgttacatttaaggagttgaaaaacttcaacaaggatcgatac
atgcgccggaacaaagagaaatctgaaagtccggaacgcgttgaagaaaagaaagatgat
aagccagatagtgagatatcaatgaatttttcagatgtcctggacgttgttatggaaaac
aaggacgtggatctcagagtcctgcatccggttatagcggagacaactccagccccggtt
gcccataagagaccctctactgaagctctagaaggaaaggttaagaagaacaaacttgat
aaatttgatattttattcggaaacgaggacgttgatctccgccaactaccacaagtagac
gaagtagtacctccaccgccgccggtcataacggattccccgaaaatggacatctccctt
gacgatcccgaggaaaacactgcatcaccaaagcagaaagactggcacgaagtcaaagag
aagaaggatgacacgaagaaaactccctcgaagttggatttagtcagggcgaagttggct
gaggcgacgaagggaaaagatcgactgggacgacctcttttatttagcaaatcaccaaac
gccagagtaaatgacctgtttaaaagtttacaaaatgtatttgttcacacactaacaggt
attgagagggagagacggcgcacgcttagctcggacgacgcggatcaaaagtcggacagc
ggggacgacatcacgccagaagaccacaagaagaccatatccattatcatgtcccaagcg
aaagaacaattcagtgacggtaaactcgataagaatcaatacaacactctcatgtaccaa
gtcttgcagctcaacgagaagctaaagctgaaagaggccaagcaaagggagtcccttgag
cagtccaagcgcaagttgaaggcccacattaacgaggagaatcaaaaagtcgcaactcca
aagacgtctccgtcggaaagaaacaacttcggtgacattgatgaaagagttactcctgct
ttccttgacactccatccgatagtcaaaactacatgcaggactcagacatgaggatgaat
tctacccattctgatgtagtggaaggtggtaaaagtaaaggattgttaccccttccaccc
atcatgccgttgtatatgggcccgtatcccatgtggagaggcaacagaccgcgaatggaa
gaatttggccctcgaaggtttagaggaccgatgccgccatttttcagaggtaaattcgat
aagagagttccgagattaccatttgaccctcgattaccgctaccgttaccgactccaaag
cttggcatgtgccaaggagagtgcccgttgaaaccgtatgagagagcagagtctccacct
ccaatcggtacccctggtcatacgatcccaccaacaaacttccaaatccttgagtacata
gatcaagatcctgtcaaaactattcagatcgatggagttcctagggagataaggttctat
ggagaaacagcagtcatcatgctagattgggatgaccctcgtgagattaaatttctacct
ggttgcagaagagtgacgttcgataacaaggattctgtactccttaactttaacgagagc
tacaagcaagtagaaattgacgaccaggtgttcgacatcaggtttggtgctcctacaaga
gagctttatatcaacggcagatggtacgagtgcttctttggaggacaaccgctgggagtg
ctaatagatggtaaaccgagactgttgcatctagaaggaccactaccacaagttgacatt
ggtaaaaccaaacgaactgatctcgtcgctggtaaaataaaccttattatcaatgcaaca
cagatgtgccctgtgtatttggatgcaaaagtgcaaaagatacttataaacggacagttc
ttcacactgcgtttcgtggacgctctccgaacagtcctgattaacgagaaaccatttaaa
gtcgaatttggagacttgcctcggcctatattcattggaaaagagaagttctttgtccgt
ttctctgctttgcctcgcaacataaagcccggacaagtgcagattgcagatatggaaggg
atgtctgtacctgagcctttaaaaccagctccattggtggacacggtgactgttgaggaa
gaacccgaaactaatgaggaaccagtacaaaggccgaccaaaactcctagtccagatggt
gaaaaccaaggtcttgacatgttggctagtctaatgccttccagcatggcaccggcatct
ggctcggagtacagcgtcgcagagccaatgtttaccaagccagacaagattccgggactg
gaaacacccttagaggagaaacctgctaatccactaccagcactaagcaatataaacata
aatgatctgtttgctaagttggtagcgacaggcattgtccaaatgccaaaggaaaataag
gaggaagttaaaacagatgaagtgaaaccgaagcatgttgaagataaaactgttatacat
aaagttgatcttcttaaacctgaaacattaaagatcaaacaaccagcactggtttcccgt
ctatacggcggcatgcagtgcagtgggtgtggagctcgattccctccggagcacacggtg
cgctactctcagcatctggactggcatttccgccagaaccgacgcgagcgagactccgcc
cggcgagcgcattcacggtcctggcactacgacttacccgactggttgagatatgaagag
cttgaagagttggatgagagagaaaagaactggttcgaaacaaacgcaactaacacggat
tcgggcatcggaggcgaagtgcccgtggaggcgcctagtgctgcggccggagctcccgcg
gctgcgcattgcgcgctttgcggggacctgttcccccagttttacaatgaggatcgtgaa
gaatggcatctcaggaatgctgtgggatacaacgaccagcattaccatcctctgtgtctc
gctgactataaggcatctctagcaaaagaagaacctgaagaattaaaagaggacatagca
gatgtggaaaaaattgaaccaatagaaattaaagacacagatgaagtgcgcttggcatct
gatgatgaatcagatgttgaagtgctcgagattaaggagcccattgttgaagctttggag
atagaggaaggttcagattgtgaatcggatgatgatgacgtggtgctgaaagcagagccc
gtcgagcaggtggttctggaggacgtagatacggacgacgagacgtgtgagctgcgaaag
gaaagggatcgcactgccatggaggactttagcaaagtcaaggtcaagcaggaaccaatt
gatccagatgacgaaccagtaataacagctgaagaagaacgcttgcccaccacaatagaa
accacccacaccacagtcacctcttcaattgatggtaacgttcagctcgagactccaacc
acttcagttctaccgatcggcggtatcagaatcaacataacaaaaaccatgcccacctac
accaaccaagagcctgcgctggaagatattagcgctgacgatgaaccattacctcctggt
gaagaaccagagcttgaattcaaattgaaaccggagttggagggaattcagttcagcaga
cagcctcccgttaacaaagggagtgagttatccggactttgttcaatcatgtga
DBGET
integrated database retrieval system
