Battus philenor (pipe-vine swallowtail): 137926556
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Entry
137926556 CDS
T10485
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bphi Battus philenor (pipe-vine swallowtail)
Pathway
bphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137926556 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bphi03019
]
137926556 (Mtr4)
03041 Spliceosome [BR:
bphi03041
]
137926556 (Mtr4)
03009 Ribosome biogenesis [BR:
bphi03009
]
137926556 (Mtr4)
03016 Transfer RNA biogenesis [BR:
bphi03016
]
137926556 (Mtr4)
Enzymes [BR:
bphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137926556 (Mtr4)
Messenger RNA biogenesis [BR:
bphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137926556 (Mtr4)
Spliceosome [BR:
bphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137926556 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
137926556 (Mtr4)
Ribosome biogenesis [BR:
bphi03009
]
Eukaryotic type
Pre-60S particles
Helicases
137926556 (Mtr4)
Transfer RNA biogenesis [BR:
bphi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137926556 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
DUF3379
Motif
Other DBs
NCBI-GeneID:
137926556
NCBI-ProteinID:
XP_068626298
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MANVGNLFDCFDEPAVNAIPIQFLNVNSEKSTVEQGKEENVSAKRPHEEVEYADTAVTKR
PKQDEEDEKDLIADINLDLLNSRIVIHTLETSEGCTHEVATPPNQEYAPLTPLTSEPAKQ
YSFILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALS
NQKYREFSEEFHDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIH
YMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTP
LQHYIFPAGGDGIHLVVDEKSQFKEENFNTAMAVLSNAGDAGKGEQRGRRGGPMRGNNQS
NIFNIVKMIMERNFAPVIIFSFSKKDCEAYAMLMAKLDFNTIEEKKLVDEVFNNAMDILS
EEDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMP
ARTVVFTNCQKFDGKNFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPTVVKEMV
QGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQAAIPDLIEKVKLKQKQY
NALTVDQEHSIASYCNIRSQLELLGAQFRAFITRPEYLKPFLQPGRLVKVKTEKHEYDWG
IIINFKHTTGKGKKNENPLTAETVIIVDILLHVKKSKPDDTDTKVPCPPGEAGDVEVVPV
LHTLINQISSLRVYYPKDLRPPDNRKSVLKTIGEVKKRFPDGPPLLNPIKDMKIDDPVFK
KCVDTIKLLEERLYAHPLHKDKNRTALTAAYEQKQQYLEELNEAKAELRKAKSILHMDEL
KKRKRVLRRMGYCTMADVIELKGRIACELSSADELLLTELIFNGVFNGLSSEQSAALVSC
FVCDENASQASATGEELRGVLRQLQEFARRIAKVSIEAKMDLDEDDYVAKFKCTLMDVVL
AWCKGANFLQICKMTDVFEGSIIRCIRRLEEVLRQLCQAAKNIGNTDLERKFSDAIKMLK
RDIIFAASLYM
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgttggtaacctttttgattgttttgatgaacccgctgttaacgcgatacct
attcaatttctaaatgtgaatagtgagaaaagcacagtagaacagggaaaagaagaaaat
gtgagtgcaaagcgcccccatgaagaagttgaatatgcagatactgcggtcactaaaaga
cccaaacaggacgaagaggatgaaaaagatctaatagcagacataaacttagatctttta
aattctcgaattgtaattcatactttggagacatctgaaggatgtacacacgaggtagct
acacctcctaatcaggagtatgctcctctgacccctctaacatcagaaccagccaaacaa
tacagttttatattggatccctttcaaaaagaagctattatgtgcatagataacttgcaa
tctgttttagtatcagcgcatacatcagcaggaaaaactgttgttgcagagtatgcaata
gctctttcactgaaaaataaacagagagttatttacacaacaccaatcaaagcactgtca
aatcaaaagtacagagaattttctgaagaatttcatgatgttggactggtcaccggtgat
gtaacaataaatccatctgcttcttgtctaataatgacaacggagattttaagaaatatg
ctttacagaggatcagaaatcatgagagaagttggatgggttgtatttgatgaaatacac
tatatgagagacaaggagagaggagttgtatgggaagagaccttgattttattgccagac
aatgtgcattacgtatttctttcggctacaatcccaaatgctcgtcagtttgcggaatgg
gtatgtcgcctacattctcagccctgccatgtggtttacactgagtaccggccaactcca
ttacaacattatatttttcctgctggtggtgatggtatacatcttgtcgtggatgaaaag
agtcaattcaaagaggagaactttaatactgcaatggccgtgcttagcaacgccggggac
gctggcaaaggcgagcagcgtggtcgtcgcggcggtccaatgcgcggcaacaatcagtcc
aatatattcaacattgtaaaaatgatcatggagcgaaactttgccccagtcatcatcttt
agtttcagcaaaaaggattgcgaagcttacgctatgctgatggcaaaattagactttaat
accattgaagagaagaaactggtggatgaagtgttcaacaatgctatggacatcttgtct
gaagaggatcgcaagctaccgcaagtggagaatgtgattccactcctgcgccgtggtatc
ggcatacatcacgggggcttgctgcctatattgaaggaaactatagagattttattcggt
ttaggtctcataaaggctctgtttgcaaccgaaactttcgctatggggctcaacatgcct
gcgaggactgtggtcttcactaactgtcagaaatttgacggaaagaactttagatttata
acgtcaggagaatatatccaaatgtcgggccgcgcaggtcggcgtggtttggacgacaag
ggtatagtcatactcatgatagaccagaaagtgacccccacagtggtcaaggaaatggta
cagggcaaggctgatcccatcaactctgcatttcacctcacctataatatggtactgaat
ttattgcgagtggaggaaatcaaccctgagtatatgctggaaagaagcttctatcaattt
caaaatcaagctgcaattcctgatctaattgaaaaggtgaaactaaaacagaagcaatat
aacgcgttgacagtggaccaggagcattcgatagcgtcgtattgtaatattcgatcgcaa
ctcgagttgttgggcgcgcagtttcgcgcattcataacgcgcccggaatatctgaaaccg
ttcctgcagcccggacgacttgtaaaggtgaaaacagaaaagcatgaatatgactggggt
ataataataaatttcaaacacacaacaggcaaaggcaaaaagaatgaaaacccattgact
gctgagacagtgataattgtggatatattgttacatgtaaaaaaatccaagcctgatgat
acagataccaaggtcccatgtccaccaggagaggccggtgatgtagaagtcgtaccagtt
ctgcacacgctgattaatcaaatcagttctctccgtgtgtactatcctaaagacttgagg
ccgcctgacaatcggaagtccgtgctaaaaacaattggtgaagttaagaagcgtttcccc
gatggtccgccacttctgaatccaataaaagacatgaaaatagatgacccagtgtttaag
aaatgtgtggacacaattaagttattagaagaaaggttatatgcacacccattacacaag
gacaaaaatcgtacagcattaaccgctgcctatgaacagaagcagcagtaccttgaggag
ttgaacgaagccaaggcagagctcaggaaagcgaagagtatattgcacatggacgaacta
aaaaaacggaaacgtgtactgcgcagaatgggatactgtacgatggctgatgtgatcgag
ctaaaaggtcggatagcctgcgagttaagtagcgccgacgaattgttgctgactgagttg
atatttaacggcgtgttcaacgggctgagctccgagcagagcgctgcgctggtgagctgc
tttgtctgcgacgagaacgcctcgcaggcctccgccaccggggaggagctccgcggcgtg
ttgcgacaattacaggaattcgctcgtcgaatagccaaagtgtctatcgaagctaaaatg
gatttggatgaggacgactacgtggcaaagttcaaatgcacgctaatggacgtcgtgctc
gcgtggtgcaagggcgctaatttcttgcaaatatgcaagatgactgatgtgtttgaaggt
tctatcatccgatgcattcggcggttggaggaggtgcttcgtcaactctgtcaggcggcc
aaaaatatcggtaacaccgacttagagcgaaagttcagcgatgcaatcaaaatgctcaaa
cgcgacattatattcgctgccagtctgtacatgtga
DBGET
integrated database retrieval system
