Battus philenor (pipe-vine swallowtail): 137930213
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Entry
137930213 CDS
T10485
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bphi Battus philenor (pipe-vine swallowtail)
Brite
KEGG Orthology (KO) [BR:
bphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bphi03016
]
137930213 (RtcB)
Enzymes [BR:
bphi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
137930213 (RtcB)
Transfer RNA biogenesis [BR:
bphi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
137930213 (RtcB)
Prokaryotic type
tRNA splicing ligases
137930213 (RtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF5077
DUF6471
Motif
Other DBs
NCBI-GeneID:
137930213
NCBI-ProteinID:
XP_068629490
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRNYNEELKYLEKINPHCWKIKKGFQPNMNVEGIFYVNNTLEKLMLDELRNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMSNPESIVSPGGVGFD
INCGVRLLRTNLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KYAAGKMGLERTGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIDVNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKIE
EHVVDGKLKKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGSMGTCSYVLTGTHQGM
TETFGTTCHGAGRALSRAKSRRNIDYKDVLSKLETMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKSVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtaaggaattataatgaagagcttaaatatctagagaaaataaaccctcattgc
tggaagatcaaaaaagggtttcagcccaatatgaacgttgagggaatattttacgttaat
aatacgcttgaaaaattaatgttggatgaactgaggaattcttgtagacctggaatgacg
ggagggttcttgccgggcgtaaaacaaattgcaaatgtagctgcattgccaggcatcgtt
ggccgatcaattggattgccagatatccattcaggatatggtttcgctataggaaatatg
gcagcttttgacatgtctaacccagagtcgatagtttcaccaggaggtgtaggttttgat
attaattgcggtgttcgtttgttgagaactaacttacatgaaaaagatgtgcaaccaata
aaggaacaactagctcagagtctttttgatcatatacctgttggtgttggttccaaaggt
attatacccatgaatgcaagagatatggaagaagctttagaaatgggaatggattggtct
ttgagagaaggatatgtttgggccgaagacaaagaacattgtgaggaatatggccgtatg
ttaaatgcagatccatcaaaagtcagtttaagagcaaaaaaaagaggtttaccccagctt
ggaactttaggagctggtaaccattatgcagaaatacaagtagtggatgaaatttatgat
aaatatgcagctggaaaaatgggattagaaagaactggacaagttgtggttatgattcat
tcaggtagcagaggatttgggcatcaagtagccacagatgctttagtccaaatggaaaag
gcaatgaaaagagataaaatagatgtcaatgataggcaactggcatgtgcaagaataaac
tcggtggaaggtcaagactatttgaaagcaatggcggctgcagcaaattttgcatgggtg
aaccgaagttctatgacttttctaactcgccaggcctttgcaaagcaattcaaaatggca
cctgatgacttagatatgcatgttatttatgacgtttcccacaatatagctaaaattgaa
gaacatgttgtggatgggaagttgaaaaaattgttagttcatagaaagggttctactcgg
gcatttccacctcatcatcccttaataccagtagattatcagttaactggccaacctgta
ttgattggtggctctatgggaacatgcagttatgttcttactggaacccatcagggtatg
actgaaacttttggaactacctgtcatggtgctggccgtgcattatcccgtgcaaaatct
agaagaaacattgattataaagatgtcttgagtaaacttgagactatgggcatttctata
agagtagcatcaccaaagttggtcatggaggaagcacctgaatcttacaagaatgttact
gatgttgttaatacatgtcatgctgctggtattagtaagaagtctgtaaaattaaggcca
attgcagttatcaagggataa
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