Brachyspira pilosicoli P43/6/78: BPP43_11235
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Entry
BPP43_11235 CDS
T02387
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpip
Brachyspira pilosicoli P43/6/78
Pathway
bpip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BPP43_11235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpip03400
]
BPP43_11235
Enzymes [BR:
bpip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPP43_11235
DNA repair and recombination proteins [BR:
bpip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BPP43_11235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
Cas3-like_C_2
RecG_dom3_C
Fer4_20
Motif
Other DBs
NCBI-ProteinID:
AGA67403
UniProt:
A0A3B6VNI8
LinkDB
All DBs
Position
complement(2350788..2354378)
Genome browser
AA seq
1196 aa
AA seq
DB search
MENTEISNLLIEKFINSEEYKSFDLNTVKNIYGIKGGGDSLFFAALFKDKNKSLMIIKDD
ENEAMLLSQALNFYNIENYYFPDYDSVPFTKMSPITDIVQDRLSILYKLINEDKFILITT
IKAISRKLPNKETLKNNTINIKVNDKLNIDSLRLNLYDLGYVIEREVSEVGTCAVRGSII
DIYSILYNNPIRIELFDDEVESIRFFDIEDGKSYKNVEEITIYPVREAIYKDSLVEEFLN
NDSELKDDIQKSKYFAGSENLLGVFNKDLQTIFDYTNENIIFTDDILKLKNKLINVLSTT
EENFNDIDNIFKSFYDNINSLYIDTNYFEEIAKNTINLSPFIVDNNIHKFSFEEGVSFKS
KLTEFLDYIKDYRKKDYFIILSTSHYDQAKRFYKIMDNLEPKLIASEENDNNEENKIAEE
NNIIDSEEKLDFSNNKNNFYIITTQSASGFIKDDIKTIFIADWEVFGRKRKRVKKIPKVN
KNIIETFVDLNIGDYAVHVNYGIGKYLGLTRKLSNGKEKDYLTLEYAKGDKLYIPVEQMN
FVQKYISGSGEEPKLTALGGSAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDT
QWQDDFEASFNYEETVDQLRAINDIKSDMESDKMMDRLVCGDVGFGKTEVAFRAIFKAVM
AGKQCAILCPTTILSQQHYNNAKKRFEDFPVRIEVLNRFISSRQAKKNKEMLANGSCDII
IGTHMLLSDDIKFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMAL
TGIRDISIIETPPLNRIPVKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFAL
MIKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDS
ANKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAM
RDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEATNEYKGEIKEVTFDTVIDFKHNLFI
PDEYISDPKEKISVYKLIMRSQSDEDIDTAKEYMIDKYGKMPKEMEDIFSIAKLKVILKR
VRVLSVIEGHYNMYIKLDKYSKIDAKKVSKLVSLEGSGVYFDKENLNQLIIPVVDDSLIW
KINKVSEVILEIESEEENKDKSKEKSLADANIESQRKNKQNNIRKRKIIKINKREN
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatactgaaatatcaaatctcttaatagaaaaatttataaacagcgaagaatat
aaatcttttgatttaaacactgtaaaaaatatatatggcataaaaggcggaggagattct
cttttttttgctgctctttttaaagataaaaacaaaagtttaatgattataaaagacgat
gaaaatgaagctatgctcttaagtcaagctttaaacttttataatattgagaattattat
tttccagattatgacagtgtaccttttactaaaatgtctcctattacagatatagtgcaa
gacagattaagtattttatataaactaattaatgaagataaatttattttaataacaaca
ataaaagctatttcaagaaaacttccaaacaaagaaacattaaaaaataatacaattaat
ataaaagttaatgataaattaaatattgattctttgaggctcaatttatatgatttagga
tatgtgatagagagagaagtttctgaggttggaacttgtgctgtgaggggcagtataata
gatatatattctattctttataataatcctattagaatagagttgtttgatgatgaagtt
gagagtataagattttttgatatagaagatggaaagtcatataaaaacgttgaagagatt
acaatatatcctgtaagagaagctatttacaaagattcacttgtagaagagtttttaaat
aatgatagtgagttaaaagatgatatacaaaaaagtaaatattttgctggaagtgaaaac
ttacttggagtatttaataaagatttacaaacaatatttgattatactaatgaaaatatt
atatttacagatgatatattaaaactaaaaaataaacttataaatgttttatcaactaca
gaagagaatttcaatgatatagacaatatatttaaatctttttatgataatataaactct
ctttatatagatacaaattattttgaagagatagcaaaaaatacaattaatttaagccct
tttatagtggataataatattcataaatttagttttgaagaaggagtttcttttaaatca
aaactaacagagtttttggattatattaaagattatagaaagaaagattattttattata
ctttctacaagccattatgaccaggcaaaaagattctataaaataatggataatttagag
ccaaaattaattgcatcagaagaaaatgataataatgaagagaataaaatagcagaagaa
aataatataatagatagcgaagaaaagcttgatttctctaataacaaaaataacttctat
ataataacaactcaatctgcatcgggctttattaaggacgatataaaaacaatatttata
gcagactgggaagtatttggaagaaaaagaaaaagagtaaaaaaaataccaaaagtaaat
aaaaatataatagaaacatttgttgatttgaatataggcgactatgctgttcatgtaaac
tatggtataggtaaatatttaggattaacccgtaaattatcaaacggaaaagaaaaagac
tatctaacattagagtatgccaaaggagataaactctatataccggtagaacagatgaac
tttgtacagaaatacatatctggaagcggagaagagccaaaattaacagcattaggcgga
agtgcttgggataaaataaaaagtaaggcaagagaagatgctttagctacagcaagagac
cttataaaaatatatgctattcgctctaatgttcatggaaatatttacggaccagacact
caatggcaagatgacttcgaagcttcatttaactatgaggaaactgttgatcaattaaga
gctatcaatgatataaagtcagacatggaaagtgataagatgatggacaggcttgtttgt
ggagatgtaggatttggaaagactgaggttgcttttagagctatatttaaagctgttatg
gctggtaaacaatgtgcaatactctgccctactacaatactctctcagcagcactataat
aatgccaaaaaaagatttgaagatttccctgttcgtatagaagtattaaatagatttatc
tcatcaagacaggctaaaaaaaataaagagatgttagcaaatggttcttgcgatatcatc
ataggtacgcatatgcttttatctgatgatattaagtttaaaaacttaggcttaatagtg
atagatgaagagcagagatttggtgtaaaacataaagaagcgttaaaaaaacttagattt
gaaactgatgtgcttacactatctgcaacaccaataccaagaacattaaacatggcatta
acaggcataagagatataagcataatagaaacgcctccattaaacagaatacctgtaaaa
acttatgtaatggagtttaacgaaaagactgttgtaaacgcaatagagagagaattaaaa
agaaatggccaagtattttatttgtataacagaatagatactatagaatcatttgctttg
atgataaaaaaactatgcccaaaagcttcaatatgtgtagcacatggaagaatgacaggt
attcagttagagaaaattatgtctgattttattaatcataaatatgacatattagtatct
acaacaataatagaaaatggaattgatatacctaatgcaaacactatattaatagatagt
gctaataaactaggtctttctgaactttatcaattaagaggaagagttggaaggagcgac
agagaggcttatgcttatatgttttatcctgaaaacttagcattaacagaagtagcttat
aaaaggcttcaagccatatcagaacatactgaccttggtgctggttttaagatagcaatg
agggatttggaaataagaggagctggcaatatattaggaaaagaacaatctggtatgatt
tatcaagttggttatgagctttatactcaaatgcttgaagaggctaccaatgaatataag
ggtgaaataaaagaagttacttttgatactgttatagattttaaacataatttgtttata
ccagatgaatatatatcagacccaaaagagaaaatatcagtatataaattaataatgcgt
tctcaaagtgatgaagacattgacactgccaaagaatatatgatagataaatatggaaaa
atgcctaaagaaatggaagatatatttagtatagcaaaattgaaagtgatactaaaaaga
gtgagagtattatcagtgatagaaggacattataatatgtatataaaacttgataaatac
tctaaaatagatgctaagaaagtttcaaaattagtttctttagaaggttctggagtttat
tttgataaagagaatctcaatcaattaataataccagtagtagatgatagtttaatttgg
aaaataaataaggtaagtgaagtaatattagaaatagaaagcgaagaagaaaataaagac
aaaagcaaagaaaaaagtttggcagatgctaatatagaatcccaaagaaaaaataagcaa
aataatataagaaaaagaaaaataataaaaattaataaaagagagaattaa
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