Candidatus Brocadia pituitae: BPIT_04990
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Entry
BPIT_04990 CDS
T07694
Name
(GenBank) phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPIT_04990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpit03019
]
BPIT_04990
Messenger RNA biogenesis [BR:
bpit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BPIT_04990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
BBO16207
LinkDB
All DBs
Position
complement(589283..590839)
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AA seq
518 aa
AA seq
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MQLFQILPYLLLPACIAIGYFLCILVFRKKQAASEKKIKHLIEESVRDAEKIKKEADVAA
KAELYQRREAFEKETQETKMELRLQEKRFSKREDNLERKMELLTKKERYIDTLSANFAQK
EKKLDEKRLELEKTIEEENKTLLKISNLSREEAEKLLLNRLEKELDIKCAELISKKITES
KENAEQTAISLISTAIQRCAATHTAENIVSSIELPNNEMKGRIIGREGRNIRAFEKATGI
DVIVDDTPGVIVLSGFDSVRREIARQSMEKLIIDGRIHPAHIEEIVKETEKEIEQVIQET
GKQTCFDLGIHNIHQEIIKLIGRLKYRTSYGQNQLQHSIEVANLMGIIAGELKLDVPLAK
RCGLLHDIGKAIGPEMEGTHAVAGADLAKRYDERPEVVNAIGGHHEETPVESVYTVLVSA
TDAISAGRPGARRETLEKYIKRLEKLESIATSFGGVESAYAIQAGREVRVMVCPDKTNDK
AAAKMCYDIAREIEGQLEYPGEVVVTVIRETRFVEHAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgcaactatttcaaatactgccatacctccttcttcctgcatgcatcgctattggatac
ttcctgtgtattcttgtattcagaaaaaaacaagcggccagcgaaaagaagataaagcat
ctcattgaagaatcagtccgggatgctgaaaagattaaaaaagaggctgatgtggcagca
aaagcagaactgtaccagcgaagagaagcattcgaaaaagaaacgcaagaaaccaagatg
gaactcagattgcaggaaaagaggttcagtaaaagagaagacaacctcgaacgcaaaatg
gagttgttgacaaaaaaggagcgatatatcgacacgctttctgcaaacttcgcgcagaaa
gaaaaaaaattagacgagaagagactggaactggaaaaaaccatagaagaagagaacaaa
acccttctgaaaatatccaacttatccagagaagaggcagagaaacttttattaaaccgg
ctcgaaaaggaactcgacattaaatgcgccgaattaatttcaaaaaaaattactgaatca
aaggaaaatgctgaacagactgctatatcgttaataagcacggcaatccaacgttgcgct
gcaactcacaccgctgaaaatattgtaagctcaatagagctcccgaacaatgaaatgaaa
ggacgcatcataggacgtgaagggagaaacatccgcgcctttgagaaggcaactggcatc
gatgtcattgtcgatgatacccctggcgtaatcgtcctttcagggtttgatagtgttcgc
cgggaaatagcacggcaatcgatggaaaagttgattattgacggacggatccatccagca
cacattgaagaaattgtcaaagaaacagaaaaggaaattgagcaggtcattcaggaaacg
ggaaagcaaacgtgctttgatttggggattcataacattcatcaggagattataaagctt
attggcaggctcaagtaccggacgagttacggacaaaatcaattgcagcattctatcgaa
gttgccaacctcatggggattattgcaggagaattaaaactggacgtcccgctggcaaaa
cggtgcggtcttttgcacgacatcggtaaggctattggcccggaaatggaaggcacccac
gccgttgccggtgcagatcttgcaaaacgttatgatgaaagacctgaagtggttaacgca
atcggtggtcatcatgaagaaacgcccgttgaatcggtttatacggtattggtaagtgca
accgatgccatttccgccgggcgaccaggtgcaaggagagaaacgttagaaaagtatatc
aaacggctggagaaactggaaagtattgcaacctctttcggcggcgtagaaagtgcctat
gccatccaggcaggaagggaagtgcgggtaatggtatgtccggataagactaatgacaag
gctgccgcaaagatgtgttacgacattgccagagaaattgaaggacaattagaatatccc
ggtgaggtcgttgttaccgtaattcgggaaacacgctttgttgaacatgcaaagtag
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