Candidatus Brocadia pituitae: BPIT_10720
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Entry
BPIT_10720 CDS
T07694
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BPIT_10720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_10720
Enzymes [BR:
bpit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPIT_10720
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BPIT_10720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
BBO16780
LinkDB
All DBs
Position
1240717..1244208
Genome browser
AA seq
1163 aa
AA seq
DB search
MGIFHLYMAAMKKFVRLLQEHKRYKEITRNLRSGKDSAVNGLWGSSAVFLTAALANERLR
TSKAALQILLVVSHIEEARNDFEDLNTFLPGHTSLFPALEDLYDADSADNAEIQEQRILV
LNRILHSDVQTGNGIDIIVTPVQGLLQAVPSPKTLSENMLRIRRNHEYPQEELIAWLQDH
HYGVTSQVENAGEYALRGGIVDIFPFASDTPYRIEYFGDAVESIRRFQAESQLSEQELDV
CQILALDTIHNTKNGIQLSSPAPFPSQGGHGKRGILAGKEALPGNTTASIHPEPENTSFL
SYLGKDTWIVLKEPTGIEDRARTMLASMGVQEEISRGNEEDPVKQPLSGEGGDRVDSCHS
FFDKKTVFSYEEVLCQLRSFRKITVSKLPISSNGDDHAFHVKSADNFPQKIQEITAELGR
IIDTNNHTIVFCNNEAEEQRFQEILAEAGLKNNHRLSLRIGHLHCGFQFSDIHIAILAHH
EIFHRYQQRRETKKPIQTRAIDSFLDLKKGDYVVHLSHGIGRYLGLDTLEEEGQKREYLT
LEFDEGTKIYVPATKIELVQKYIGSSDHKPRLDKIGSKYWEVRKKRAEHAVKDVASDLLH
IQALRNAKEGIAYQKDTEWQREFEESFLYEETPDQLQVLEDMKRDMESKRPMDRLICGDV
GYGKTELAMRAAFKAVMEGKQVAVLVPTTILAQQHYVTFSERMADYPVRLGVLSRFKTRR
EQKDTLEKAAAGSLDILIGTHRLLQKDVYFKDLGLVIIDEEQRFGVEHKERLKRLRQTVD
VLTLTATPIPRTLHMSLMGIKDISSLNTPPLGRQAIHTHIIRFDPARIRQAIMLELNRDG
QVYFVHNRVYNIERIARNLTEIVPEARIMTVHGQMDEKLMEQRMRDFIDGRADILVATTI
IESGLDIPNVNTIFINCADTFGLADLHQLRGRVGRYRHRAYAYIILPVDRPITPEAEKRV
KAIEEFAELGAGFRIAMRDLEIRGAGNILGTEQHGHIAAVGYEMYCRLLELAVKKARHES
IPELIDVSIDLHLESFIPHTYIREDALKMDIYRRLNRSTTFREVKAIAEEMADRFGEIPH
PVRNLLSESELRIVAQQSKIRSMVKVDGVLVIQVADLKKAEASFDKLKKSIRVINDNTLH
LGLPAKKMLPEDLLDFLKKSIKI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgggtatttttcacttgtacatggctgctatgaaaaagtttgtcaggctccttcaggaa
cataagcgatataaggaaatcaccagaaatttgcggtccgggaaggatagcgctgttaac
ggactatgggggtcgtctgcagtgttccttaccgcggccctggcgaatgagcgtttaagg
acgtcaaaagcagcactccaaatacttctggtggtgtcccatattgaagaagccagaaat
gattttgaagacctgaatacctttttgcctggacatacgagtcttttcccggcgcttgaa
gatctgtatgacgccgattcagcagataatgccgagatccaggagcaaaggattcttgtc
ctcaaccggatacttcacagcgatgtccaaacagggaacggcatagatatcattgtaacg
ccggttcagggacttttacaggccgtgccgtctcctaaaaccctttctgaaaatatgctg
agaatccggaggaatcatgaatatcctcaggaagagcttatcgcatggctgcaggatcac
cactacggtgttacgagtcaggttgaaaatgccggggaatatgcattgcgtggcggtatt
gttgatattttcccgtttgcctcagataccccttaccgtatcgagtattttggagatgca
gttgagtccatccggagatttcaggctgagtcccagctttccgagcaggaactggacgtc
tgccagatacttgcccttgataccattcacaacacaaaaaacggcattcagctttcttct
cctgccccctttccttcacaaggggggcacgggaagcgtggaatacttgccggcaaagag
gcccttccagggaataccactgccagtatccatccggaacctgaaaacacctccttcctc
tcttaccttgggaaagatacctggattgtcctgaaagagccgacagggatagaagatcgg
gcgcgaacgatgttggccagcatgggtgtccaggaagaaatttcccgtgggaatgaagaa
gacccggtcaaacaacccttgtccggagaaggcggggatagggtagattcgtgtcactca
ttctttgacaaaaagaccgtgttttcctatgaagaagttctttgccagttacgttccttc
agaaagattaccgtgtcaaaattgcccatatcctcaaacggtgacgaccatgcttttcat
gttaaatcggcagataattttccccaaaaaattcaggaaattaccgcggaactgggcagg
atcattgacaccaataaccatacgatagttttttgcaataacgaggccgaggagcagcgg
tttcaggagattctcgccgaggcagggctgaaaaataaccatcgtctgtcactgcgtata
gggcacctgcactgcgggtttcaattctcagacattcacattgcgattcttgcgcaccat
gagatctttcatcggtatcagcagcgccgcgagacaaaaaaaccgatacaaaccagggcg
attgattcctttctggatttgaaaaaaggggattatgtggtgcacttaagccatgggatt
ggacgttaccttgggctggatacccttgaagaggagggacagaaaagggagtatctcacg
ctggaatttgatgagggtacgaagatctatgtgcctgcaacaaagattgaactggtgcag
aagtatattggcagttctgaccacaagcccaggctcgataaaatcggatcaaagtattgg
gaggtcagaaagaaacgtgcagaacatgccgttaaggacgttgccagtgatctgctgcat
attcaggcattacggaatgcaaaggaaggcattgcataccagaaggatacggagtggcag
agggaatttgaggagtcgtttctttacgaagagacccctgaccagcttcaggtgctggag
gacatgaagcgtgacatggagtcgaagagacctatggaccggctcatctgcggtgacgtt
gggtatggcaagaccgagcttgccatgcgggcagccttcaaggcggttatggagggaaaa
caggtggccgtcctcgtgcccacgacaatccttgcccagcagcactatgtcaccttctcg
gaacgcatggctgattatccggtgaggctaggggtgttgagcaggtttaaaacgcgcagg
gagcagaaagataccctggagaaggcggcggccggttctcttgacatcctcatcggcacc
caccggcttttacagaaagacgtctattttaaggatcttggactggttattattgatgaa
gagcagcgattcggggtcgaacacaaggagcggctcaagcgattgcggcagactgtggat
gtgcttacccttaccgccacgccgattcccagaaccctccatatgtcgctcatggggatt
aaggatatctcctccctgaatacgccgccattaggcaggcaggctattcacacgcacatt
atacgatttgacccggcacgtatccggcaagcgatcatgctggaactcaaccgtgacgga
caggtttactttgttcataatcgtgtgtacaacatcgagcgcattgccagaaacttaaca
gagattgtgcctgaggcaagaatcatgacggtgcacgggcaaatggatgaaaaacttatg
gaacagcggatgcgggactttattgatggtcgtgcagatatcctggtggccacgacgatc
attgaatcaggcctggatataccaaacgtcaacacgatctttatcaattgcgccgacacc
tttgggctggcggatctgcatcagttgcgggggagggtggggcgatatagacatcgtgcc
tatgcctatatcatcttacccgtcgaccggcccattacccctgaggcagaaaaacgggta
aaggccatcgaagaatttgccgaattaggcgcaggattccgcattgccatgcgtgacctg
gaaatccgtggcgccggaaatatcctgggaacggagcagcatggtcatatcgctgcggta
ggatacgagatgtattgccggttattagagttggccgtgaaaaaggcaaggcacgaatcg
ataccggaactcatagatgtttccatcgatctgcatctggaatccttcattccccatacc
tacattcgggaagatgctttaaaaatggacatctaccggagattgaatcgttccaccacc
tttcgggaagtaaaggcgattgctgaagaaatggcagaccgttttggggagattcctcat
ccggtaaggaatctcctgtctgaaagcgagttaaggatcgttgcccagcagtcgaagatt
cgttccatggtaaaggtggatggtgtcttagttattcaagttgctgatttgaaaaaagcg
gaggcaagttttgacaaactgaaaaaatctatacgggttattaacgacaacacgttacac
ttaggacttcccgcaaaaaagatgttgccggaggatttgctagactttttgaagaaatcc
attaaaatttaa
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