Candidatus Brocadia pituitae: BPIT_22060
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Entry
BPIT_22060 CDS
T07694
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPIT_22060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpit03021
]
BPIT_22060
03019 Messenger RNA biogenesis [BR:
bpit03019
]
BPIT_22060
Transcription machinery [BR:
bpit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BPIT_22060
Messenger RNA biogenesis [BR:
bpit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BPIT_22060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
ATPase_2
AAA_22
NACHT
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
BBO17914
LinkDB
All DBs
Position
complement(2512115..2513449)
Genome browser
AA seq
444 aa
AA seq
DB search
MATANGRKEPVIVDQETNEKYEEIKRGEMHITELQKMTIKELQETAKSEGIKEYTGLKKQ
DLIFKILKERVNQNGLMYGEGVVEVLPEGFGFLRSPDYNYLPCPDDIYISPSQIRRFGIR
TGVVVSGQIRPPKDTERYFALLRVEAINFENPEIMGEKIVFDDLTPLHPTERIFLEKNPT
ELETRIMDLVTPIGKGQRGLIVAPPRTGKTVLLQKIANSITKNHPEVYLIILLIDERPEE
VTDMDRSVEAEVIGSTFDEPASRHIQVAEMVIEKAKRMVEYGRDVVVLLDSITRLARAYN
TEVPHSGKILSGGVDASALQKPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEF
KGTGNMELHLDRKLADRRLFPAIDITRSGTRKEELIVNAEEIKRMWMLRKVLNEMNPVEA
MELLKNRLAKTKTNAEFLMTMNIT
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcaaatgggagaaaggaacctgtgattgtagatcaggaaacaaatgaaaaa
tacgaagaaattaaacgcggtgagatgcatattaccgaattgcagaaaatgaccattaag
gaactgcaggaaaccgcaaaaagtgaagggattaaagagtataccggactgaagaagcaa
gacttgatttttaaaattctgaaagagcgggttaatcagaacggtcttatgtatggggaa
ggggtagttgaggtgcttccggaaggatttggatttttgcggtcaccggattacaattat
ttgccttgccccgatgacatctatatctctccttcccagattcgccgattcggcatcagg
acaggagtcgttgtgtccgggcagatcagaccaccgaaggatacagaacggtattttgct
ttgttgcgggtagaggcgatcaattttgagaatccagaaatcatgggggaaaagatagtc
ttcgatgatttaactcctttacaccccacggaaagaatatttttagaaaaaaacccgaca
gaacttgaaacaaggattatggatctggttacccctatcggaaagggccaaagggggctg
atcgttgctccccccagaacaggaaaaaccgttttattacaaaagattgcaaacagtatt
accaagaatcatcctgaagtgtatttgattatcctgctcattgatgaacgtccggaagag
gtaactgatatggacagatccgtggaagccgaagttattggttcaacatttgatgaacca
gcaagccggcacattcaggtggctgagatggtgattgaaaaggcaaaacggatggtggaa
tatggtagggacgttgtcgtgctccttgattctattacgaggttggcgagggcgtacaat
actgaggtccctcatagtggaaagatcctctctggtggtgtggatgccagtgctctgcaa
aaaccgaagaggttttttggcgcagcaagaaatattgaagaaggtggaagccttacgatt
attgcaaccgcattaatcgataccggaagcaggatggatgaggtgatctttgaggagttt
aaaggcacggggaatatggaactgcatctggacagaaaattggcagatcgcagattgttt
cctgctatagacattacccgctctggtacccggaaagaagagttgattgtaaatgcggag
gaaattaaacgcatgtggatgcttcgaaaggtgcttaacgaaatgaatcctgtcgaggcc
atggaattgctgaaaaacagattggcgaaaacaaagaccaatgccgaattcctcatgacg
atgaatattacgtaa
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